Difference between revisions of "ORNCARBAMTRANSFER-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-9655 == * direction: ** left-to-right * common-name: ** fatty acid synthase ** 3-hydroxydecanoyl-[acp] dehydrase * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction ORNCARBAMTRANSFER-RXN == * direction: ** reversible * common-name: ** ornithine carbamoyltransferase * ec-number: ** [http://enzyme.expasy.or...")
 
(3 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9655 ==
+
== Reaction ORNCARBAMTRANSFER-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** fatty acid synthase
+
** ornithine carbamoyltransferase
−
** 3-hydroxydecanoyl-[acp] dehydrase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.1.3.3 ec-2.1.3.3]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
−
* synonymous:
 
−
** β-hydroxyacyl-acyl carrier protein dehydratase
 
−
** (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
 
−
** d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
 
−
** hddase
 
−
** faba
 
−
** β-hydroxyacyl-acp dehydrase
 
−
** β-hydroxydecanoate dehydrase
 
−
** β-hydroxydecanoyl thiol ester dehydrase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[L-CITRULLINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ18541]]
−
* Gene: [[SJ19629]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11672]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06944]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17743]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03883]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04769]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00613]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00320]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13014]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04443]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10275]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
</div>
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-862]], (5Z)-dodecenoate biosynthesis I:
+
* [[PWY-4984]], urea cycle:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
+
* [[CITRULLINE-DEG-PWY]], L-citrulline degradation:
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis (animals and fungi, cytoplasm):
+
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle):
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7400]], L-arginine biosynthesis IV (archaea):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine):
 +
** '''5''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-4981]], L-proline biosynthesis II (from arginine):
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=fatty acid synthase|3-hydroxydecanoyl-[acp] dehydrase}}
+
* RHEA:
−
{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.86|ec-2.3.1.85}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19516 19516]
−
{{#set: synonymous=&beta;-hydroxyacyl-acp dehydrase|&beta;-hydroxyacyl-acyl carrier protein dehydratase|d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase|(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|hddase|faba|&beta;-hydroxydecanoate dehydrase|&beta;-hydroxydecanoyl thiol ester dehydrase}}
+
* LIGAND-RXN:
−
{{#set: nb gene associated=16}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01398 R01398]
−
{{#set: nb pathway associated=3}}
+
* UNIPROT:
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q58291 Q58291]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q9CHD1 Q9CHD1]
 +
** [http://www.uniprot.org/uniprot/Q7M182 Q7M182]
 +
** [http://www.uniprot.org/uniprot/Q9JTI4 Q9JTI4]
 +
** [http://www.uniprot.org/uniprot/P11727 P11727]
 +
** [http://www.uniprot.org/uniprot/Q9CEY4 Q9CEY4]
 +
** [http://www.uniprot.org/uniprot/Q9CE14 Q9CE14]
 +
** [http://www.uniprot.org/uniprot/Q9PNU6 Q9PNU6]
 +
** [http://www.uniprot.org/uniprot/P44770 P44770]
 +
** [http://www.uniprot.org/uniprot/Q9YHY9 Q9YHY9]
 +
** [http://www.uniprot.org/uniprot/P11066 P11066]
 +
** [http://www.uniprot.org/uniprot/P11803 P11803]
 +
** [http://www.uniprot.org/uniprot/P18186 P18186]
 +
** [http://www.uniprot.org/uniprot/P05150 P05150]
 +
** [http://www.uniprot.org/uniprot/P14995 P14995]
 +
** [http://www.uniprot.org/uniprot/P06960 P06960]
 +
** [http://www.uniprot.org/uniprot/P04391 P04391]
 +
** [http://www.uniprot.org/uniprot/P00480 P00480]
 +
** [http://www.uniprot.org/uniprot/P11725 P11725]
 +
** [http://www.uniprot.org/uniprot/P21302 P21302]
 +
** [http://www.uniprot.org/uniprot/P11724 P11724]
 +
** [http://www.uniprot.org/uniprot/P08308 P08308]
 +
** [http://www.uniprot.org/uniprot/P68747 P68747]
 +
** [http://www.uniprot.org/uniprot/P00481 P00481]
 +
** [http://www.uniprot.org/uniprot/P31317 P31317]
 +
** [http://www.uniprot.org/uniprot/Q01322 Q01322]
 +
** [http://www.uniprot.org/uniprot/Q01323 Q01323]
 +
** [http://www.uniprot.org/uniprot/Q01324 Q01324]
 +
** [http://www.uniprot.org/uniprot/Q01326 Q01326]
 +
** [http://www.uniprot.org/uniprot/Q01325 Q01325]
 +
** [http://www.uniprot.org/uniprot/Q9JYI3 Q9JYI3]
 +
** [http://www.uniprot.org/uniprot/Q01327 Q01327]
 +
** [http://www.uniprot.org/uniprot/P0A5M9 P0A5M9]
 +
** [http://www.uniprot.org/uniprot/Q02047 Q02047]
 +
** [http://www.uniprot.org/uniprot/Q9TRC9 Q9TRC9]
 +
** [http://www.uniprot.org/uniprot/Q48296 Q48296]
 +
** [http://www.uniprot.org/uniprot/P75473 P75473]
 +
** [http://www.uniprot.org/uniprot/Q49080 Q49080]
 +
** [http://www.uniprot.org/uniprot/Q43814 Q43814]
 +
** [http://www.uniprot.org/uniprot/O53089 O53089]
 +
** [http://www.uniprot.org/uniprot/O50039 O50039]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=ornithine carbamoyltransferase}}
 +
{{#set: ec-number=ec-2.1.3.3}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=7}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction ORNCARBAMTRANSFER-RXN

  • direction:
    • reversible
  • common-name:
    • ornithine carbamoyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-4984, urea cycle:
    • 5 reactions found over 5 reactions in the full pathway
  • CITRULLINE-DEG-PWY, L-citrulline degradation:
    • 1 reactions found over 3 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle):
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7400, L-arginine biosynthesis IV (archaea):
    • 7 reactions found over 9 reactions in the full pathway
  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine):
    • 5 reactions found over 4 reactions in the full pathway
  • PWY-4981, L-proline biosynthesis II (from arginine):
    • 3 reactions found over 2 reactions in the full pathway
  • CITRULBIO-PWY, L-citrulline biosynthesis:
    • 7 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ORNCARBAMTRANSFER-RXN&oldid=142323"