Difference between revisions of "ORNITHINE-GLU-AMINOTRANSFERASE-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13186 RXN-13186] == * direction: ** left-to-right * common-name: ** histone demethylase activit...")
(Created page with "Category:reaction == Reaction ORNITHINE-GLU-AMINOTRANSFERASE-RXN == * direction: ** reversible * common-name: ** ornithine--oxo-glutarate aminotransferase ** ornithine-&de...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13186 RXN-13186] ==
+
== Reaction ORNITHINE-GLU-AMINOTRANSFERASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** histone demethylase activity (h3-k36 specific)
+
** ornithine--oxo-glutarate aminotransferase
 +
** ornithine-δ-aminotransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.11.27 ec-1.14.11.27]
+
** [http://enzyme.expasy.org/EC/2.6.1.13 ec-2.6.1.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8900]][c] '''+''' 2 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[FORMALDEHYDE]][c] '''+''' 1 [[Protein-L-lysine]][c] '''+''' 2 [[SUC]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18735]]
+
* Gene: [[SJ09475]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13421]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05371]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19354]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00708]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19102]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-3341]], L-proline biosynthesis III (from L-ornithine):
 +
** '''4''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6344]], L-arginine degradation XIV (oxidative Stickland reaction):
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-4981]], L-proline biosynthesis II (from arginine):
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR102220
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42033 42033]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25160 25160]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R10056 R10056]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00667 R00667]
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=histone demethylase activity (h3-k36 specific)}}
+
{{#set: common-name=ornithine-&delta;-aminotransferase|ornithine--oxo-glutarate aminotransferase}}
−
{{#set: ec-number=ec-1.14.11.27}}
+
{{#set: ec-number=ec-2.6.1.13}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=8}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction ORNITHINE-GLU-AMINOTRANSFERASE-RXN

  • direction:
    • reversible
  • common-name:
    • ornithine--oxo-glutarate aminotransferase
    • ornithine-δ-aminotransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6922, L-Nδ-acetylornithine biosynthesis:
    • 5 reactions found over 7 reactions in the full pathway
  • ARGININE-SYN4-PWY, L-ornithine biosynthesis II:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3341, L-proline biosynthesis III (from L-ornithine):
    • 4 reactions found over 3 reactions in the full pathway
  • PWY-6344, L-arginine degradation XIV (oxidative Stickland reaction):
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-4981, L-proline biosynthesis II (from arginine):
    • 3 reactions found over 2 reactions in the full pathway
  • ARG-PRO-PWY, L-arginine degradation VI (arginase 2 pathway):
    • 3 reactions found over 4 reactions in the full pathway
  • CITRULBIO-PWY, L-citrulline biosynthesis:
    • 7 reactions found over 8 reactions in the full pathway
  • ARGASEDEG-PWY, L-arginine degradation I (arginase pathway):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR102220
  • RHEA:
  • LIGAND-RXN:





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