Difference between revisions of "OROTPDECARB-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYPRODEG-PWY HYDROXYPRODEG-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
 
(Created page with "Category:reaction == Reaction OROTPDECARB-RXN == * direction: ** left-to-right * common-name: ** orotidine-5'-phosphate decarboxylase * ec-number: ** [http://enzyme.expasy...")
 
(9 intermediate revisions by 5 users not shown)
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYPRODEG-PWY HYDROXYPRODEG-PWY] ==
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== Reaction OROTPDECARB-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33208 tax-33208]
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** left-to-right
 
* common-name:
 
* common-name:
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** trans-4-hydroxy-l-proline degradation i
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** orotidine-5'-phosphate decarboxylase
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== Reaction(s) found ==
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* ec-number:
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* [[4OH2OXOGLUTARALDOL-RXN]]
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** [http://enzyme.expasy.org/EC/4.1.1.23 ec-4.1.1.23]
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== Reaction(s) not found ==
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-545 RXN66-545]
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* 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[UMP]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14472 RXN-14472]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14471 RXN-14471]
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* Gene: [[SJ02816]]
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* [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXYGLUTAMATE-AMINOTRANSFERASE-RXN 4-HYDROXYGLUTAMATE-AMINOTRANSFERASE-RXN]
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** Category: [[orthology]]
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{{#set: taxonomic-range=tax-33208}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: common-name=trans-4-hydroxy-l-proline degradation i}}
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* Gene: [[SJ02815]]
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{{#set: nb reaction found=1}}
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** Category: [[annotation]]
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{{#set: completion rate=0.2}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb total reaction=5}}
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== Pathway(s) ==
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* [[PWY-5686]], UMP biosynthesis I:
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7790]], UMP biosynthesis II:
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7791]], UMP biosynthesis III:
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR102190
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11597 11597]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00965 R00965]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P11172 P11172]
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** [http://www.uniprot.org/uniprot/Q9KQT7 Q9KQT7]
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** [http://www.uniprot.org/uniprot/Q9CFW9 Q9CFW9]
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** [http://www.uniprot.org/uniprot/P24220 P24220]
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** [http://www.uniprot.org/uniprot/P0A5M7 P0A5M7]
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** [http://www.uniprot.org/uniprot/P43812 P43812]
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** [http://www.uniprot.org/uniprot/Q9PIC1 Q9PIC1]
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** [http://www.uniprot.org/uniprot/P10652 P10652]
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** [http://www.uniprot.org/uniprot/P07817 P07817]
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** [http://www.uniprot.org/uniprot/P03962 P03962]
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** [http://www.uniprot.org/uniprot/P14017 P14017]
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** [http://www.uniprot.org/uniprot/P07691 P07691]
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** [http://www.uniprot.org/uniprot/P08244 P08244]
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** [http://www.uniprot.org/uniprot/P13439 P13439]
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** [http://www.uniprot.org/uniprot/P05035 P05035]
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** [http://www.uniprot.org/uniprot/P09463 P09463]
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** [http://www.uniprot.org/uniprot/P14964 P14964]
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** [http://www.uniprot.org/uniprot/P21593 P21593]
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** [http://www.uniprot.org/uniprot/P15188 P15188]
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** [http://www.uniprot.org/uniprot/P07922 P07922]
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** [http://www.uniprot.org/uniprot/P0A5M6 P0A5M6]
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** [http://www.uniprot.org/uniprot/Q9JV18 Q9JV18]
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** [http://www.uniprot.org/uniprot/P25971 P25971]
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** [http://www.uniprot.org/uniprot/P46535 P46535]
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** [http://www.uniprot.org/uniprot/P31754 P31754]
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** [http://www.uniprot.org/uniprot/P32430 P32430]
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** [http://www.uniprot.org/uniprot/Q01637 Q01637]
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** [http://www.uniprot.org/uniprot/P09556 P09556]
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** [http://www.uniprot.org/uniprot/P21594 P21594]
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** [http://www.uniprot.org/uniprot/Q06375 Q06375]
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** [http://www.uniprot.org/uniprot/P41769 P41769]
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** [http://www.uniprot.org/uniprot/Q18516 Q18516]
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** [http://www.uniprot.org/uniprot/Q59654 Q59654]
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** [http://www.uniprot.org/uniprot/Q42586 Q42586]
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** [http://www.uniprot.org/uniprot/P48844 P48844]
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** [http://www.uniprot.org/uniprot/P43230 P43230]
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** [http://www.uniprot.org/uniprot/Q42942 Q42942]
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** [http://www.uniprot.org/uniprot/O74110 O74110]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=orotidine-5'-phosphate decarboxylase}}
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{{#set: ec-number=ec-4.1.1.23}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction OROTPDECARB-RXN

  • direction:
    • left-to-right
  • common-name:
    • orotidine-5'-phosphate decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5686, UMP biosynthesis I:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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