Difference between revisions of "OROTPDECARB-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction OROTPDECARB-RXN == * direction: ** left-to-right * common-name: ** orotidine-5'-phosphate decarboxylase * ec-number: ** [http://enzyme.expasy...")
(Created page with "Category:reaction == Reaction RXN-8026 == * direction: ** left-to-right * synonymous: ** crtz == Reaction formula == * 1 CPD-7409[c] '''+''' 1 OXYGEN-MOLECULE[c] '...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction OROTPDECARB-RXN ==
+
== Reaction RXN-8026 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
+
* synonymous:
−
** orotidine-5'-phosphate decarboxylase
+
** crtz
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.1.1.23 ec-4.1.1.23]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[UMP]][c]
+
* 1 [[CPD-7409]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD1F-130]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02816]]
+
* Gene: [[SJ07227]]
−
** Category: [[orthology]]
+
** Category: [[manual]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
−
* Gene: [[SJ02815]]
+
* Gene: [[SJ07228]]
−
** Category: [[annotation]]
+
** Category: [[manual]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5686]], UMP biosynthesis I:
+
* [[PWY-7638]], echinenone and zeaxanthin biosynthesis (Synechocystis):
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7790]], UMP biosynthesis II:
+
* [[PWY-5944]], zeaxanthin biosynthesis:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7791]], UMP biosynthesis III:
+
* [[PWY-5288]], astaxanthin biosynthesis (bacteria, fungi, algae):
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[sjap]]; tool: [[curation]]; comment: transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07559 R07559]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11597 11597]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30330 30330]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00965 R00965]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P11172 P11172]
 
−
** [http://www.uniprot.org/uniprot/Q9KQT7 Q9KQT7]
 
−
** [http://www.uniprot.org/uniprot/Q9CFW9 Q9CFW9]
 
−
** [http://www.uniprot.org/uniprot/P24220 P24220]
 
−
** [http://www.uniprot.org/uniprot/P0A5M7 P0A5M7]
 
−
** [http://www.uniprot.org/uniprot/P43812 P43812]
 
−
** [http://www.uniprot.org/uniprot/Q9PIC1 Q9PIC1]
 
−
** [http://www.uniprot.org/uniprot/P10652 P10652]
 
−
** [http://www.uniprot.org/uniprot/P07817 P07817]
 
−
** [http://www.uniprot.org/uniprot/P03962 P03962]
 
−
** [http://www.uniprot.org/uniprot/P14017 P14017]
 
−
** [http://www.uniprot.org/uniprot/P07691 P07691]
 
−
** [http://www.uniprot.org/uniprot/P08244 P08244]
 
−
** [http://www.uniprot.org/uniprot/P13439 P13439]
 
−
** [http://www.uniprot.org/uniprot/P05035 P05035]
 
−
** [http://www.uniprot.org/uniprot/P09463 P09463]
 
−
** [http://www.uniprot.org/uniprot/P14964 P14964]
 
−
** [http://www.uniprot.org/uniprot/P21593 P21593]
 
−
** [http://www.uniprot.org/uniprot/P15188 P15188]
 
−
** [http://www.uniprot.org/uniprot/P07922 P07922]
 
−
** [http://www.uniprot.org/uniprot/P0A5M6 P0A5M6]
 
−
** [http://www.uniprot.org/uniprot/Q9JV18 Q9JV18]
 
−
** [http://www.uniprot.org/uniprot/P25971 P25971]
 
−
** [http://www.uniprot.org/uniprot/P46535 P46535]
 
−
** [http://www.uniprot.org/uniprot/P31754 P31754]
 
−
** [http://www.uniprot.org/uniprot/P32430 P32430]
 
−
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
 
−
** [http://www.uniprot.org/uniprot/P09556 P09556]
 
−
** [http://www.uniprot.org/uniprot/P21594 P21594]
 
−
** [http://www.uniprot.org/uniprot/Q06375 Q06375]
 
−
** [http://www.uniprot.org/uniprot/P41769 P41769]
 
−
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
 
−
** [http://www.uniprot.org/uniprot/Q59654 Q59654]
 
−
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
 
−
** [http://www.uniprot.org/uniprot/P48844 P48844]
 
−
** [http://www.uniprot.org/uniprot/P43230 P43230]
 
−
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
 
−
** [http://www.uniprot.org/uniprot/O74110 O74110]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=orotidine-5'-phosphate decarboxylase}}
+
{{#set: synonymous=crtz}}
−
{{#set: ec-number=ec-4.1.1.23}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=sjap}}

Revision as of 15:05, 5 January 2021

Reaction RXN-8026

  • direction:
    • left-to-right
  • synonymous:
    • crtz

Reaction formula

Gene(s) associated with this reaction

  • Gene: SJ07227
    • Category: manual
      • Source: sjap, Tool: unknown-tool, Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
  • Gene: SJ07228
    • Category: manual
      • Source: sjap, Tool: unknown-tool, Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)

Pathway(s)

  • PWY-7638, echinenone and zeaxanthin biosynthesis (Synechocystis):
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5944, zeaxanthin biosynthesis:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5288, astaxanthin biosynthesis (bacteria, fungi, algae):
    • 2 reactions found over 10 reactions in the full pathway

Reconstruction information

  • category: manual; source: sjap; tool: curation; comment: transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=OROTPDECARB-RXN&oldid=63826"