Difference between revisions of "ORPRT"

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(Created page with "Category:reaction == Reaction FORMYLTHFDEFORMYL-RXN == * direction: ** left-to-right * common-name: ** formyltetrahydrofolate deformylase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction 4.4.1.14-RXN == * direction: ** left-to-right * common-name: ** 1-aminocyclopropane-1-carboxylate synthase * ec-number: ** [http://enzyme.exp...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction FORMYLTHFDEFORMYL-RXN ==
+
== Reaction 4.4.1.14-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** formyltetrahydrofolate deformylase
+
** 1-aminocyclopropane-1-carboxylate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.1.10 ec-3.5.1.10]
+
** [http://enzyme.expasy.org/EC/4.4.1.14 ec-4.4.1.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[5-METHYLTHIOADENOSINE]][c] '''+''' 1 [[CPD-68]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ15379]]
+
* Gene: [[SJ04622]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7909]], formaldehyde oxidation VII (THF pathway):
+
* [[ETHYL-PWY]], ethylene biosynthesis I (plants):
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
+
* [[PWY-7270]], L-methionine salvage cycle II (plants):
−
** '''6''' reactions found over '''17''' reactions in the full pathway
+
** '''4''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 
−
** '''10''' reactions found over '''24''' reactions in the full pathway
 
−
* [[PWY-2201]], folate transformations I:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19834 19834]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21747 21747]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00944 R00944]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00179 R00179]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P37051 P37051]
+
** [http://www.uniprot.org/uniprot/P23279 P23279]
−
** [http://www.uniprot.org/uniprot/Q03432 Q03432]
+
** [http://www.uniprot.org/uniprot/Q06402 Q06402]
−
** [http://www.uniprot.org/uniprot/Q9PPC9 Q9PPC9]
+
** [http://www.uniprot.org/uniprot/Q07215 Q07215]
−
** [http://www.uniprot.org/uniprot/Q46339 Q46339]
+
** [http://www.uniprot.org/uniprot/Q42881 Q42881]
−
** [http://www.uniprot.org/uniprot/Q9X7F7 Q9X7F7]
+
** [http://www.uniprot.org/uniprot/Q00379 Q00379]
 +
** [http://www.uniprot.org/uniprot/Q06429 Q06429]
 +
** [http://www.uniprot.org/uniprot/Q9SB01 Q9SB01]
 +
** [http://www.uniprot.org/uniprot/O24062 O24062]
 +
** [http://www.uniprot.org/uniprot/Q9SB94 Q9SB94]
 +
** [http://www.uniprot.org/uniprot/Q9FUC3 Q9FUC3]
 +
** [http://www.uniprot.org/uniprot/Q94GA4 Q94GA4]
 +
** [http://www.uniprot.org/uniprot/O24217 O24217]
 +
** [http://www.uniprot.org/uniprot/Q9S9C5 Q9S9C5]
 +
** [http://www.uniprot.org/uniprot/Q43309 Q43309]
 +
** [http://www.uniprot.org/uniprot/P23599 P23599]
 +
** [http://www.uniprot.org/uniprot/Q00257 Q00257]
 +
** [http://www.uniprot.org/uniprot/Q43679 Q43679]
 +
** [http://www.uniprot.org/uniprot/Q07223 Q07223]
 +
** [http://www.uniprot.org/uniprot/Q7M286 Q7M286]
 +
** [http://www.uniprot.org/uniprot/P27486 P27486]
 +
** [http://www.uniprot.org/uniprot/P18485 P18485]
 +
** [http://www.uniprot.org/uniprot/P29535 P29535]
 +
** [http://www.uniprot.org/uniprot/Q41693 Q41693]
 +
** [http://www.uniprot.org/uniprot/Q41694 Q41694]
 +
** [http://www.uniprot.org/uniprot/P31531 P31531]
 +
** [http://www.uniprot.org/uniprot/Q43858 Q43858]
 +
** [http://www.uniprot.org/uniprot/Q43753 Q43753]
 +
** [http://www.uniprot.org/uniprot/Q43813 Q43813]
 +
** [http://www.uniprot.org/uniprot/Q43059 Q43059]
 +
** [http://www.uniprot.org/uniprot/Q43167 Q43167]
 +
** [http://www.uniprot.org/uniprot/Q43747 Q43747]
 +
** [http://www.uniprot.org/uniprot/Q43074 Q43074]
 +
** [http://www.uniprot.org/uniprot/Q42655 Q42655]
 +
** [http://www.uniprot.org/uniprot/Q42718 Q42718]
 +
** [http://www.uniprot.org/uniprot/Q43755 Q43755]
 +
** [http://www.uniprot.org/uniprot/Q43756 Q43756]
 +
** [http://www.uniprot.org/uniprot/Q43165 Q43165]
 +
** [http://www.uniprot.org/uniprot/O22464 O22464]
 +
** [http://www.uniprot.org/uniprot/Q43166 Q43166]
 +
** [http://www.uniprot.org/uniprot/Q43168 Q43168]
 +
** [http://www.uniprot.org/uniprot/Q37001 Q37001]
 +
** [http://www.uniprot.org/uniprot/Q43201 Q43201]
 +
** [http://www.uniprot.org/uniprot/Q43204 Q43204]
 +
** [http://www.uniprot.org/uniprot/O49904 O49904]
 +
** [http://www.uniprot.org/uniprot/Q42984 Q42984]
 +
** [http://www.uniprot.org/uniprot/O24220 O24220]
 +
** [http://www.uniprot.org/uniprot/Q07262 Q07262]
 +
** [http://www.uniprot.org/uniprot/O24219 O24219]
 +
** [http://www.uniprot.org/uniprot/P93235 P93235]
 +
** [http://www.uniprot.org/uniprot/Q9STR4 Q9STR4]
 +
** [http://www.uniprot.org/uniprot/Q9T065 Q9T065]
 +
** [http://www.uniprot.org/uniprot/O24609 O24609]
 +
** [http://www.uniprot.org/uniprot/Q42893 Q42893]
 +
** [http://www.uniprot.org/uniprot/Q96579 Q96579]
 +
** [http://www.uniprot.org/uniprot/Q96580 Q96580]
 +
** [http://www.uniprot.org/uniprot/P93234 P93234]
 +
** [http://www.uniprot.org/uniprot/O24432 O24432]
 +
** [http://www.uniprot.org/uniprot/O65017 O65017]
 +
** [http://www.uniprot.org/uniprot/O65018 O65018]
 +
** [http://www.uniprot.org/uniprot/Q42668 Q42668]
 +
** [http://www.uniprot.org/uniprot/O49819 O49819]
 +
** [http://www.uniprot.org/uniprot/O81957 O81957]
 +
** [http://www.uniprot.org/uniprot/O65159 O65159]
 +
** [http://www.uniprot.org/uniprot/Q41688 Q41688]
 +
** [http://www.uniprot.org/uniprot/O24544 O24544]
 +
** [http://www.uniprot.org/uniprot/Q39931 Q39931]
 +
** [http://www.uniprot.org/uniprot/Q9SAR0 Q9SAR0]
 +
** [http://www.uniprot.org/uniprot/P37821 P37821]
 +
** [http://www.uniprot.org/uniprot/O24061 O24061]
 +
** [http://www.uniprot.org/uniprot/Q9M2Y8 Q9M2Y8]
 +
** [http://www.uniprot.org/uniprot/Q9SMH1 Q9SMH1]
 +
** [http://www.uniprot.org/uniprot/Q9SEJ9 Q9SEJ9]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=formyltetrahydrofolate deformylase}}
+
{{#set: common-name=1-aminocyclopropane-1-carboxylate synthase}}
−
{{#set: ec-number=ec-3.5.1.10}}
+
{{#set: ec-number=ec-4.4.1.14}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:05, 14 January 2021

Reaction 4.4.1.14-RXN

  • direction:
    • left-to-right
  • common-name:
    • 1-aminocyclopropane-1-carboxylate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ETHYL-PWY, ethylene biosynthesis I (plants):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7270, L-methionine salvage cycle II (plants):
    • 4 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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