Difference between revisions of "ORPRT"

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(Created page with "Category:reaction == Reaction FORMYLTHFDEFORMYL-RXN == * direction: ** left-to-right * common-name: ** formyltetrahydrofolate deformylase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction RXN-13677 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.4.11.2 ec-3.4.11.2] == Reaction formula == * 1 CP...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction FORMYLTHFDEFORMYL-RXN ==
+
== Reaction RXN-13677 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** formyltetrahydrofolate deformylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.1.10 ec-3.5.1.10]
+
** [http://enzyme.expasy.org/EC/3.4.11.2 ec-3.4.11.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* 1 [[CPD-14705]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-14706]][c] '''+''' 1 [[GLY]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ15379]]
+
* Gene: [[SJ10244]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7909]], formaldehyde oxidation VII (THF pathway):
+
* [[PWY-7112]], 4-hydroxy-2-nonenal detoxification:
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
 
−
** '''6''' reactions found over '''17''' reactions in the full pathway
 
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 
−
** '''10''' reactions found over '''24''' reactions in the full pathway
 
−
* [[PWY-2201]], folate transformations I:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR118240
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19834 19834]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00944 R00944]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P37051 P37051]
 
−
** [http://www.uniprot.org/uniprot/Q03432 Q03432]
 
−
** [http://www.uniprot.org/uniprot/Q9PPC9 Q9PPC9]
 
−
** [http://www.uniprot.org/uniprot/Q46339 Q46339]
 
−
** [http://www.uniprot.org/uniprot/Q9X7F7 Q9X7F7]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=formyltetrahydrofolate deformylase}}
+
{{#set: ec-number=ec-3.4.11.2}}
−
{{#set: ec-number=ec-3.5.1.10}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:38, 15 March 2021

Reaction RXN-13677

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7112, 4-hydroxy-2-nonenal detoxification:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR118240





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