Difference between revisions of "OXALODECARB-RXN"

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(Created page with "Category:reaction == Reaction 2.5.1.32-RXN == * direction: ** left-to-right * common-name: ** prephytoene diphosphate synthase * synonymous: ** geranylgeranyl-diphosphate...")
(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase (decarboxylating) (nad+) ** oxaloacetate decarboxylas...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.5.1.32-RXN ==
+
== Reaction OXALODECARB-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** prephytoene diphosphate synthase
+
** malate dehydrogenase (decarboxylating) (nad+)
−
* synonymous:
+
** oxaloacetate decarboxylase
−
** geranylgeranyl-diphosphate geranylgeranyltransferase
+
* ec-number:
−
** psase
+
** [http://enzyme.expasy.org/EC/1.1.1.40 ec-1.1.1.40]
 +
** [http://enzyme.expasy.org/EC/4.1.1.3 ec-4.1.1.3]
 +
** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02885]]
+
* Gene: [[SJ11643]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14191]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13180]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7943]], lycopadiene biosynthesis:
+
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
+
* [[PWY-6339]], syringate degradation:
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6287]], neurosporene biosynthesis:
+
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR102097
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P53609 P53609]
+
** [http://www.uniprot.org/uniprot/P13187 P13187]
−
** [http://www.uniprot.org/uniprot/P37295 P37295]
+
** [http://www.uniprot.org/uniprot/P13155 P13155]
−
** [http://www.uniprot.org/uniprot/P22872 P22872]
+
** [http://www.uniprot.org/uniprot/P13156 P13156]
−
** [http://www.uniprot.org/uniprot/P53610 P53610]
+
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
−
** [http://www.uniprot.org/uniprot/P53612 P53612]
 
−
** [http://www.uniprot.org/uniprot/P17056 P17056]
 
−
** [http://www.uniprot.org/uniprot/P49293 P49293]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=prephytoene diphosphate synthase}}
+
{{#set: common-name=oxaloacetate decarboxylase|malate dehydrogenase (decarboxylating) (nad+)}}
−
{{#set: synonymous=geranylgeranyl-diphosphate geranylgeranyltransferase|psase}}
+
{{#set: ec-number=ec-1.1.1.40|ec-1.1.1.38|ec-4.1.1.3}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction OXALODECARB-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P184-PWY, protocatechuate degradation I (meta-cleavage pathway):
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6339, syringate degradation:
    • 2 reactions found over 9 reactions in the full pathway
  • METHYLGALLATE-DEGRADATION-PWY, methylgallate degradation:
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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