Difference between revisions of "Octadec-2-enoyl-ACPs"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] == * direction: ** reversible * common-name: ** aspartate tran...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] == * direction: ** left-to-right * common-name: ** riboflavi...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPAMINOTRANS-RXN ASPAMINOTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** aspartate transaminase
+
** riboflavin synthase
−
** l-phenylalanine:2-oxoglutarate aminotransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.1 ec-2.6.1.1]
+
** [http://enzyme.expasy.org/EC/2.5.1.9 ec-2.5.1.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ASPARTATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[OXALACETIC_ACID]][c]
+
* 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[RIBOFLAVIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ11166]]
−
* Gene: [[SJ04188]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ08678]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05778]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07646]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20943]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-DEG1-PWY-1 ASPARAGINE-DEG1-PWY-1]
+
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[ASPARTATESYN-PWY]], L-aspartate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATESYN-PWY ASPARTATESYN-PWY]
+
* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''5''' reactions found over '''10''' reactions in the full pathway
−
* [[GLUTDEG-PWY]], L-glutamate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLUTDEG-PWY GLUTDEG-PWY]
+
* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[ASPARTATE-DEG1-PWY]], L-aspartate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-DEG1-PWY ASPARTATE-DEG1-PWY]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=MALATE-ASPARTATE-SHUTTLE-PWY MALATE-ASPARTATE-SHUTTLE-PWY]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21827 21827]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20773 20773]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00355 R00355]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7LZ21 Q7LZ21]
+
** [http://www.uniprot.org/uniprot/P11998 P11998]
−
** [http://www.uniprot.org/uniprot/P08906 P08906]
+
** [http://www.uniprot.org/uniprot/P16440 P16440]
−
** [http://www.uniprot.org/uniprot/P12343 P12343]
+
** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
−
** [http://www.uniprot.org/uniprot/Q06191 Q06191]
+
** [http://www.uniprot.org/uniprot/O24854 O24854]
−
** [http://www.uniprot.org/uniprot/Q02635 Q02635]
+
** [http://www.uniprot.org/uniprot/O26237 O26237]
−
** [http://www.uniprot.org/uniprot/Q60317 Q60317]
+
** [http://www.uniprot.org/uniprot/P66037 P66037]
−
** [http://www.uniprot.org/uniprot/O28151 O28151]
+
** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
−
** [http://www.uniprot.org/uniprot/O67781 O67781]
+
** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
−
** [http://www.uniprot.org/uniprot/P08907 P08907]
+
** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
−
** [http://www.uniprot.org/uniprot/P12345 P12345]
+
** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
−
** [http://www.uniprot.org/uniprot/Q9X0Y2 Q9X0Y2]
+
** [http://www.uniprot.org/uniprot/P45273 P45273]
−
** [http://www.uniprot.org/uniprot/Q9PPF7 Q9PPF7]
+
** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
−
** [http://www.uniprot.org/uniprot/Q9JVS3 Q9JVS3]
+
** [http://www.uniprot.org/uniprot/O66529 O66529]
−
** [http://www.uniprot.org/uniprot/P53001 P53001]
+
** [http://www.uniprot.org/uniprot/Q58584 Q58584]
−
** [http://www.uniprot.org/uniprot/P96847 P96847]
+
** [http://www.uniprot.org/uniprot/O28856 O28856]
−
** [http://www.uniprot.org/uniprot/Q9K0P5 Q9K0P5]
+
** [http://www.uniprot.org/uniprot/Q01994 Q01994]
−
** [http://www.uniprot.org/uniprot/Q9X224 Q9X224]
+
** [http://www.uniprot.org/uniprot/P61714 P61714]
−
** [http://www.uniprot.org/uniprot/Q9Y9P0 Q9Y9P0]
+
** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
−
** [http://www.uniprot.org/uniprot/Q9RWP3 Q9RWP3]
+
** [http://www.uniprot.org/uniprot/P38145 P38145]
−
** [http://www.uniprot.org/uniprot/O66737 O66737]
+
** [http://www.uniprot.org/uniprot/Q55532 Q55532]
−
** [http://www.uniprot.org/uniprot/O28650 O28650]
+
** [http://www.uniprot.org/uniprot/P73527 P73527]
−
** [http://www.uniprot.org/uniprot/O30304 O30304]
+
** [http://www.uniprot.org/uniprot/Q44680 Q44680]
−
** [http://www.uniprot.org/uniprot/Q9CEK7 Q9CEK7]
+
** [http://www.uniprot.org/uniprot/Q44681 Q44681]
−
** [http://www.uniprot.org/uniprot/O27916 O27916]
+
** [http://www.uniprot.org/uniprot/P50854 P50854]
−
** [http://www.uniprot.org/uniprot/O05237 O05237]
+
** [http://www.uniprot.org/uniprot/P50856 P50856]
−
** [http://www.uniprot.org/uniprot/Q9YE99 Q9YE99]
 
−
** [http://www.uniprot.org/uniprot/O25383 O25383]
 
−
** [http://www.uniprot.org/uniprot/O27638 O27638]
 
−
** [http://www.uniprot.org/uniprot/O96142 O96142]
 
−
** [http://www.uniprot.org/uniprot/Q9ZLG5 Q9ZLG5]
 
−
** [http://www.uniprot.org/uniprot/P00507 P00507]
 
−
** [http://www.uniprot.org/uniprot/P44425 P44425]
 
−
** [http://www.uniprot.org/uniprot/Q59569 Q59569]
 
−
** [http://www.uniprot.org/uniprot/Q59197 Q59197]
 
−
** [http://www.uniprot.org/uniprot/P37833 P37833]
 
−
** [http://www.uniprot.org/uniprot/O48599 O48599]
 
−
** [http://www.uniprot.org/uniprot/O33822 O33822]
 
−
** [http://www.uniprot.org/uniprot/P05201 P05201]
 
−
** [http://www.uniprot.org/uniprot/P05202 P05202]
 
−
** [http://www.uniprot.org/uniprot/P14909 P14909]
 
−
** [http://www.uniprot.org/uniprot/P17174 P17174]
 
−
** [http://www.uniprot.org/uniprot/P33097 P33097]
 
−
** [http://www.uniprot.org/uniprot/Q43057 Q43057]
 
−
** [http://www.uniprot.org/uniprot/Q43305 Q43305]
 
−
** [http://www.uniprot.org/uniprot/Q42794 Q42794]
 
−
** [http://www.uniprot.org/uniprot/P12344 P12344]
 
−
** [http://www.uniprot.org/uniprot/Q01802 Q01802]
 
−
** [http://www.uniprot.org/uniprot/Q40325 Q40325]
 
−
** [http://www.uniprot.org/uniprot/P36692 P36692]
 
−
** [http://www.uniprot.org/uniprot/P28011 P28011]
 
−
** [http://www.uniprot.org/uniprot/Q42391 Q42391]
 
−
** [http://www.uniprot.org/uniprot/Q9L0L5 Q9L0L5]
 
−
** [http://www.uniprot.org/uniprot/Q53951 Q53951]
 
−
** [http://www.uniprot.org/uniprot/Q42803 Q42803]
 
−
** [http://www.uniprot.org/uniprot/Q42425 Q42425]
 
−
** [http://www.uniprot.org/uniprot/Q55128 Q55128]
 
−
** [http://www.uniprot.org/uniprot/P72859 P72859]
 
−
** [http://www.uniprot.org/uniprot/Q55453 Q55453]
 
−
** [http://www.uniprot.org/uniprot/Q55679 Q55679]
 
−
** [http://www.uniprot.org/uniprot/O48598 O48598]
 
−
** [http://www.uniprot.org/uniprot/Q42991 Q42991]
 
−
** [http://www.uniprot.org/uniprot/P46248 P46248]
 
−
** [http://www.uniprot.org/uniprot/O48548 O48548]
 
−
** [http://www.uniprot.org/uniprot/Q60013 Q60013]
 
−
** [http://www.uniprot.org/uniprot/P28734 P28734]
 
−
** [http://www.uniprot.org/uniprot/Q17994 Q17994]
 
−
** [http://www.uniprot.org/uniprot/Q17983 Q17983]
 
−
** [http://www.uniprot.org/uniprot/Q22066 Q22066]
 
−
** [http://www.uniprot.org/uniprot/Q22067 Q22067]
 
−
** [http://www.uniprot.org/uniprot/O01804 O01804]
 
−
** [http://www.uniprot.org/uniprot/O54170 O54170]
 
−
** [http://www.uniprot.org/uniprot/O42652 O42652]
 
−
** [http://www.uniprot.org/uniprot/O94320 O94320]
 
−
** [http://www.uniprot.org/uniprot/P46644 P46644]
 
−
** [http://www.uniprot.org/uniprot/P00504 P00504]
 
−
** [http://www.uniprot.org/uniprot/P00508 P00508]
 
−
** [http://www.uniprot.org/uniprot/P00509 P00509]
 
−
** [http://www.uniprot.org/uniprot/P00505 P00505]
 
−
** [http://www.uniprot.org/uniprot/P00503 P00503]
 
−
** [http://www.uniprot.org/uniprot/P00506 P00506]
 
−
** [http://www.uniprot.org/uniprot/P26563 P26563]
 
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=l-phenylalanine:2-oxoglutarate aminotransferase|aspartate transaminase}}
+
{{#set: common-name=riboflavin synthase}}
−
{{#set: ec-number=ec-2.6.1.1}}
+
{{#set: ec-number=ec-2.5.1.9}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=9}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 14:24, 26 August 2019

Reaction RIBOFLAVIN-SYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • riboflavin synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6167, flavin biosynthesis II (archaea): PWY-6167
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi): PWY-6168
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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