Difference between revisions of "PABASYN-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-7 PWY4FS-7] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-27...")
(Created page with "Category:reaction == Reaction F16BDEPHOS-RXN == * direction: ** left-to-right * common-name: ** fructose-1,6-bisphosphatase ** fructose 1,6-bisphosphate 1-phosphatase * ec...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-7 PWY4FS-7] ==
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== Reaction F16BDEPHOS-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-2759]
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
 
* common-name:
 
* common-name:
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** phosphatidylglycerol biosynthesis i (plastidic)
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** fructose-1,6-bisphosphatase
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== Reaction(s) found ==
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** fructose 1,6-bisphosphate 1-phosphatase
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* [[PGPPHOSPHA-RXN]]
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* ec-number:
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* [[PHOSPHAGLYPSYN-RXN]]
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** [http://enzyme.expasy.org/EC/3.1.3.11 ec-3.1.3.11]
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== Reaction(s) not found ==
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== Reaction formula ==
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All reactions of this pathways are in present
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* 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[Pi]][c]
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{{#set: taxonomic-range=tax-2759|tax-2}}
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== Gene(s) associated with this reaction  ==
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{{#set: common-name=phosphatidylglycerol biosynthesis i (plastidic)}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: nb reaction found=2}}
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* Gene: [[SJ14175]]
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{{#set: completion rate=1.0}}
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** Category: [[annotation]]
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{{#set: nb total reaction=2}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ16950]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ17320]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ13518]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ14821]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ10463]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ20807]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
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== Pathway(s) ==
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[PWY66-399]], gluconeogenesis III:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis):
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
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** '''12''' reactions found over '''13''' reactions in the full pathway
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* [[GLUCONEO-PWY]], gluconeogenesis I:
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** '''12''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
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** '''11''' reactions found over '''12''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11065 11065]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00762 R00762]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P09199 P09199]
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** [http://www.uniprot.org/uniprot/P19112 P19112]
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** [http://www.uniprot.org/uniprot/P22780 P22780]
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** [http://www.uniprot.org/uniprot/P09467 P09467]
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** [http://www.uniprot.org/uniprot/Q9JUL6 Q9JUL6]
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** [http://www.uniprot.org/uniprot/Q9CIU9 Q9CIU9]
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** [http://www.uniprot.org/uniprot/P09202 P09202]
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** [http://www.uniprot.org/uniprot/Q45597 Q45597]
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** [http://www.uniprot.org/uniprot/P45292 P45292]
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** [http://www.uniprot.org/uniprot/Q9PP83 Q9PP83]
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** [http://www.uniprot.org/uniprot/P19912 P19912]
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** [http://www.uniprot.org/uniprot/P19911 P19911]
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** [http://www.uniprot.org/uniprot/Q9HGZ4 Q9HGZ4]
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** [http://www.uniprot.org/uniprot/P09201 P09201]
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** [http://www.uniprot.org/uniprot/P0A993 P0A993]
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** [http://www.uniprot.org/uniprot/P00636 P00636]
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** [http://www.uniprot.org/uniprot/P23014 P23014]
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** [http://www.uniprot.org/uniprot/P27994 P27994]
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** [http://www.uniprot.org/uniprot/P14766 P14766]
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** [http://www.uniprot.org/uniprot/P09195 P09195]
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** [http://www.uniprot.org/uniprot/Q7M0S7 Q7M0S7]
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** [http://www.uniprot.org/uniprot/P25851 P25851]
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** [http://www.uniprot.org/uniprot/Q05079 Q05079]
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** [http://www.uniprot.org/uniprot/P46275 P46275]
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** [http://www.uniprot.org/uniprot/P46276 P46276]
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** [http://www.uniprot.org/uniprot/Q43139 Q43139]
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** [http://www.uniprot.org/uniprot/P00637 P00637]
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** [http://www.uniprot.org/uniprot/O65827 O65827]
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** [http://www.uniprot.org/uniprot/Q42796 Q42796]
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** [http://www.uniprot.org/uniprot/P46267 P46267]
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** [http://www.uniprot.org/uniprot/Q07204 Q07204]
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** [http://www.uniprot.org/uniprot/P22418 P22418]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=fructose 1,6-bisphosphate 1-phosphatase|fructose-1,6-bisphosphatase}}
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{{#set: ec-number=ec-3.1.3.11}}
 +
{{#set: nb gene associated=7}}
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{{#set: nb pathway associated=7}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:44, 18 December 2020

Reaction F16BDEPHOS-RXN

  • direction:
    • left-to-right
  • common-name:
    • fructose-1,6-bisphosphatase
    • fructose 1,6-bisphosphate 1-phosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • PWY66-399, gluconeogenesis III:
    • 11 reactions found over 12 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis):
    • 6 reactions found over 7 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I:
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate):
    • 10 reactions found over 11 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
    • 11 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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