Difference between revisions of "PANTEPADENYLYLTRAN-RXN"

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(Created page with "Category:reaction == Reaction ISOCIT-CLEAV-RXN == * direction: ** reversible * common-name: ** isocitrate lyase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.3.1 ec-4.1...")
(Created page with "Category:reaction == Reaction PANTEPADENYLYLTRAN-RXN == * direction: ** left-to-right * common-name: ** phosphopantetheine adenylyltransferase * ec-number: ** [http://enzy...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ISOCIT-CLEAV-RXN ==
+
== Reaction PANTEPADENYLYLTRAN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** isocitrate lyase
+
** phosphopantetheine adenylyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.3.1 ec-4.1.3.1]
+
** [http://enzyme.expasy.org/EC/2.7.7.3 ec-2.7.7.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PANTETHEINE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[DEPHOSPHO-COA]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10623]]
+
* Gene: [[SJ10598]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20645]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02830]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05932]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05283]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
+
* [[PWY-7851]], coenzyme A biosynthesis II (eukaryotic):
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
+
* [[COA-PWY]], coenzyme A biosynthesis I (prokaryotic):
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR95892
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13248 13248]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19802 19802]
−
* PIR:
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41338 A41338]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40713 I40713]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JA0155 JA0155]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC6182 JC6182]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26857 S26857]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26858 S26858]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39953 S39953]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52819 S52819]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S77654 S77654]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04115 T04115]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06353 T06353]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07631 T07631]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07632 T07632]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08046 T08046]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09774 T09774]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09779 T09779]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11209 T11209]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZBYI WZBYI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCKI WZCKI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCNIU WZCNIU]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCSI WZCSI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZECIC WZECIC]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZRPI WZRPI]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00479 R00479]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03035 R03035]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P28467 P28467]
+
{{#set: common-name=phosphopantetheine adenylyltransferase}}
−
** [http://www.uniprot.org/uniprot/P42449 P42449]
+
{{#set: ec-number=ec-2.7.7.3}}
−
** [http://www.uniprot.org/uniprot/P20699 P20699]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/O13439 O13439]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/P28299 P28299]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/Q12031 Q12031]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P46831 P46831]
 
−
** [http://www.uniprot.org/uniprot/O24588 O24588]
 
−
** [http://www.uniprot.org/uniprot/P49297 P49297]
 
−
** [http://www.uniprot.org/uniprot/P45456 P45456]
 
−
** [http://www.uniprot.org/uniprot/P45457 P45457]
 
−
** [http://www.uniprot.org/uniprot/Q39577 Q39577]
 
−
** [http://www.uniprot.org/uniprot/Q41084 Q41084]
 
−
** [http://www.uniprot.org/uniprot/Q43097 Q43097]
 
−
** [http://www.uniprot.org/uniprot/P28240 P28240]
 
−
** [http://www.uniprot.org/uniprot/P20014 P20014]
 
−
** [http://www.uniprot.org/uniprot/P17069 P17069]
 
−
** [http://www.uniprot.org/uniprot/P15479 P15479]
 
−
** [http://www.uniprot.org/uniprot/P0A9G6 P0A9G6]
 
−
** [http://www.uniprot.org/uniprot/P25248 P25248]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=isocitrate lyase}}
 
−
{{#set: ec-number=ec-4.1.3.1}}
 
−
{{#set: nb gene associated=4}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction PANTEPADENYLYLTRAN-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphopantetheine adenylyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7851, coenzyme A biosynthesis II (eukaryotic):
    • 3 reactions found over 4 reactions in the full pathway
  • COA-PWY, coenzyme A biosynthesis I (prokaryotic):
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR95892
  • RHEA:
  • LIGAND-RXN:





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