Difference between revisions of "PAPS"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARDP ARDP] == * direction: ** left-to-right * common-name: ** adp-ribose diphosphatase == Reaction...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLENETHFDEHYDROG-NADP-RXN METHYLENETHFDEHYDROG-NADP-RXN] == * direction: ** reversible * common...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARDP ARDP] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLENETHFDEHYDROG-NADP-RXN METHYLENETHFDEHYDROG-NADP-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** adp-ribose diphosphatase
+
** methylenetetrahydrofolate dehydrogenase (nadp+)
 +
** methylenetetrahydrofolate dehydrogenase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.5.1.5 ec-1.5.1.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[ADENOSINE_DIPHOSPHATE_RIBOSE]][c] '''+''' 1.0 [[WATER]][c] '''=>''' 1.0 [[AMP]][c] '''+''' 1.0 [[CPD-15318]][c] '''+''' 2.0 [[PROTON]][c]
+
* 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[NADPH]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13701]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ12991]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02922]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10799]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17385]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11954]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02262]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7909]], formaldehyde oxidation VII (THF pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7909 PWY-7909]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1722 PWY-1722]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=adp-ribose diphosphatase}}
+
* RHEA:
−
{{#set: nb gene associated=1}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22815 22815]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=orthology}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01220 R01220]
−
{{#set: reconstruction tool=pantograph}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P09440 P09440]
 +
** [http://www.uniprot.org/uniprot/P07245 P07245]
 +
** [http://www.uniprot.org/uniprot/P11586 P11586]
 +
** [http://www.uniprot.org/uniprot/P44313 P44313]
 +
** [http://www.uniprot.org/uniprot/P47259 P47259]
 +
** [http://www.uniprot.org/uniprot/P54382 P54382]
 +
** [http://www.uniprot.org/uniprot/O67736 O67736]
 +
** [http://www.uniprot.org/uniprot/Q9JWI9 Q9JWI9]
 +
** [http://www.uniprot.org/uniprot/Q9PP68 Q9PP68]
 +
** [http://www.uniprot.org/uniprot/P24186 P24186]
 +
** [http://www.uniprot.org/uniprot/Q60006 Q60006]
 +
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
 +
** [http://www.uniprot.org/uniprot/P51696 P51696]
 +
** [http://www.uniprot.org/uniprot/O65269 O65269]
 +
** [http://www.uniprot.org/uniprot/O65271 O65271]
 +
** [http://www.uniprot.org/uniprot/O68031 O68031]
 +
** [http://www.uniprot.org/uniprot/Q9ZTV0 Q9ZTV0]
 +
** [http://www.uniprot.org/uniprot/Q9X7F6 Q9X7F6]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=methylenetetrahydrofolate dehydrogenase|methylenetetrahydrofolate dehydrogenase (nadp+)}}
 +
{{#set: ec-number=ec-1.5.1.5}}
 +
{{#set: nb gene associated=6}}
 +
{{#set: nb pathway associated=7}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction METHYLENETHFDEHYDROG-NADP-RXN

  • direction:
    • reversible
  • common-name:
    • methylenetetrahydrofolate dehydrogenase (nadp+)
    • methylenetetrahydrofolate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • 1CMET2-PWY, N10-formyl-tetrahydrofolate biosynthesis: 1CMET2-PWY
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 10 reactions found over 24 reactions in the full pathway
  • CODH-PWY, reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): CODH-PWY
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-7909, formaldehyde oxidation VII (THF pathway): PWY-7909
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3841, folate transformations II: PWY-3841
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-2201, folate transformations I: PWY-2201
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-1722, formate assimilation into 5,10-methylenetetrahydrofolate: PWY-1722
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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