Difference between revisions of "PDHam2hi"

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(Created page with "Category:reaction == Reaction RXN-16637 == * direction: ** left-to-right * common-name: ** aminoacyl-trna hydrolase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.1.29 e...")
(Created page with "Category:reaction == Reaction PDHam2hi == * direction: ** left-to-right * common-name: ** pyruvate dehydrogenase (lipoamide), chloroplast irreversible == Reaction formula...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-16637 ==
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== Reaction PDHam2hi ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** aminoacyl-trna hydrolase
+
** pyruvate dehydrogenase (lipoamide), chloroplast irreversible
* ec-number:
 
** [http://enzyme.expasy.org/EC/3.1.1.29 ec-3.1.1.29]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CYS]][c] '''+''' 1 [[CYS-tRNAs]][c] '''+''' 1 [[PROTON]][c]
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* 1.0 [[2-ALPHA-HYDROXYETHYL-THPP]][h] '''+''' 1.0 [[LIPOAMIDE]][h] '''=>''' 1.0 [[S-ACETYLDIHYDROLIPOAMIDE]][h] '''+''' 1.0 [[THIAMINE-PYROPHOSPHATE]][h]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[SJ09312]]
* Gene: [[SJ00680]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ03879]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ05960]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ02121]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ09079]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6308]], L-cysteine biosynthesis II (tRNA-dependent):
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=aminoacyl-trna hydrolase}}
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{{#set: common-name=pyruvate dehydrogenase (lipoamide), chloroplast irreversible}}
{{#set: ec-number=ec-3.1.1.29}}
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{{#set: nb gene associated=1}}
{{#set: nb gene associated=5}}
+
{{#set: nb pathway associated=0}}
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=orthology}}
{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:24, 18 March 2021

Reaction PDHam2hi

  • direction:
    • left-to-right
  • common-name:
    • pyruvate dehydrogenase (lipoamide), chloroplast irreversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links