Difference between revisions of "PDHam2mi"

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(Created page with "Category:reaction == Reaction GCVT-RXN == * direction: ** reversible * common-name: ** aminomethyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1....")
(Created page with "Category:reaction == Reaction RXN-15414 == * direction: ** left-to-right * common-name: ** grixazone b synthase * ec-number: ** [http://enzyme.expasy.org/EC/1.10.3.15 ec-1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GCVT-RXN ==
+
== Reaction RXN-15414 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** aminomethyltransferase
+
** grixazone b synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1.2.10]
+
** [http://enzyme.expasy.org/EC/1.10.3.15 ec-1.10.3.15]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c]
+
* 2 [[CPD-14873]][c] '''+''' 1 [[CPD-9175]][c] '''+''' 2 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-14875]][c] '''+''' 4 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16345]]
+
* Gene: [[SJ09941]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19914]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08557]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLYCLEAV-PWY]], glycine cleavage:
+
* [[PWY-7153]], grixazone biosynthesis:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=left-to-right}}
−
* LIGAND-RXN:
+
{{#set: common-name=grixazone b synthase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
+
{{#set: ec-number=ec-1.10.3.15}}
−
* RHEA:
+
{{#set: nb gene associated=1}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P25285 P25285]
 
−
** [http://www.uniprot.org/uniprot/P28337 P28337]
 
−
** [http://www.uniprot.org/uniprot/P27248 P27248]
 
−
** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
 
−
** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
 
−
** [http://www.uniprot.org/uniprot/P48728 P48728]
 
−
** [http://www.uniprot.org/uniprot/P49364 P49364]
 
−
** [http://www.uniprot.org/uniprot/P49095 P49095]
 
−
** [http://www.uniprot.org/uniprot/P49363 P49363]
 
−
** [http://www.uniprot.org/uniprot/P54260 P54260]
 
−
** [http://www.uniprot.org/uniprot/P49361 P49361]
 
−
** [http://www.uniprot.org/uniprot/P49362 P49362]
 
−
** [http://www.uniprot.org/uniprot/O49954 O49954]
 
−
** [http://www.uniprot.org/uniprot/P93256 P93256]
 
−
** [http://www.uniprot.org/uniprot/O32955 O32955]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=aminomethyltransferase}}
 
−
{{#set: ec-number=ec-2.1.2.10}}
 
−
{{#set: nb gene associated=3}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:25, 15 January 2021

Reaction RXN-15414

  • direction:
    • left-to-right
  • common-name:
    • grixazone b synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7153, grixazone biosynthesis:
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=PDHam2mi&oldid=116301"