Difference between revisions of "PDHam2mi"

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(Created page with "Category:reaction == Reaction GCVT-RXN == * direction: ** reversible * common-name: ** aminomethyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1....")
(Created page with "Category:reaction == Reaction PDHam2mi == * direction: ** left-to-right * common-name: ** pyruvate dehydrogenase (lipoamide), mitochondrial irreversible == Reaction formul...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction GCVT-RXN ==
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== Reaction PDHam2mi ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** aminomethyltransferase
+
** pyruvate dehydrogenase (lipoamide), mitochondrial irreversible
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1.2.10]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c]
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* 1.0 [[2-ALPHA-HYDROXYETHYL-THPP]][m] '''+''' 1.0 [[LIPOAMIDE]][m] '''=>''' 1.0 [[S-ACETYLDIHYDROLIPOAMIDE]][m] '''+''' 1.0 [[THIAMINE-PYROPHOSPHATE]][m]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16345]]
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* Gene: [[SJ19470]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ19914]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08557]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLYCLEAV-PWY]], glycine cleavage:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: direction=left-to-right}}
−
* LIGAND-RXN:
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{{#set: common-name=pyruvate dehydrogenase (lipoamide), mitochondrial irreversible}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
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{{#set: nb gene associated=1}}
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* RHEA:
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{{#set: nb pathway associated=0}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
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{{#set: reconstruction category=orthology}}
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* UNIPROT:
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{{#set: reconstruction tool=pantograph}}
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** [http://www.uniprot.org/uniprot/P25285 P25285]
 
−
** [http://www.uniprot.org/uniprot/P28337 P28337]
 
−
** [http://www.uniprot.org/uniprot/P27248 P27248]
 
−
** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
 
−
** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
 
−
** [http://www.uniprot.org/uniprot/P48728 P48728]
 
−
** [http://www.uniprot.org/uniprot/P49364 P49364]
 
−
** [http://www.uniprot.org/uniprot/P49095 P49095]
 
−
** [http://www.uniprot.org/uniprot/P49363 P49363]
 
−
** [http://www.uniprot.org/uniprot/P54260 P54260]
 
−
** [http://www.uniprot.org/uniprot/P49361 P49361]
 
−
** [http://www.uniprot.org/uniprot/P49362 P49362]
 
−
** [http://www.uniprot.org/uniprot/O49954 O49954]
 
−
** [http://www.uniprot.org/uniprot/P93256 P93256]
 
−
** [http://www.uniprot.org/uniprot/O32955 O32955]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=aminomethyltransferase}}
 
−
{{#set: ec-number=ec-2.1.2.10}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:23, 18 March 2021

Reaction PDHam2mi

  • direction:
    • left-to-right
  • common-name:
    • pyruvate dehydrogenase (lipoamide), mitochondrial irreversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=PDHam2mi&oldid=142345"