Difference between revisions of "PDHam2mi"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction DIHYDROXYISOVALDEHYDRAT-RXN == * direction: ** left-to-right * common-name: ** 2,3-dihydroxy-isovalerate dehydratase * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction PDHam2mi == * direction: ** left-to-right * common-name: ** pyruvate dehydrogenase (lipoamide), mitochondrial irreversible == Reaction formul...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DIHYDROXYISOVALDEHYDRAT-RXN ==
+
== Reaction PDHam2mi ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2,3-dihydroxy-isovalerate dehydratase
+
** pyruvate dehydrogenase (lipoamide), mitochondrial irreversible
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.2.1.9 ec-4.2.1.9]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-13357]][c] '''=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c]
+
* 1.0 [[2-ALPHA-HYDROXYETHYL-THPP]][m] '''+''' 1.0 [[LIPOAMIDE]][m] '''=>''' 1.0 [[S-ACETYLDIHYDROLIPOAMIDE]][m] '''+''' 1.0 [[THIAMINE-PYROPHOSPHATE]][m]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19719]]
+
* Gene: [[SJ19470]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[VALSYN-PWY]], L-valine biosynthesis:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered):
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR97358
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24810 24810]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R04441 R04441]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P55186 P55186]
 
−
** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
 
−
** [http://www.uniprot.org/uniprot/P05791 P05791]
 
−
** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
 
−
** [http://www.uniprot.org/uniprot/P44851 P44851]
 
−
** [http://www.uniprot.org/uniprot/Q02139 Q02139]
 
−
** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
 
−
** [http://www.uniprot.org/uniprot/P39522 P39522]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2,3-dihydroxy-isovalerate dehydratase}}
+
{{#set: common-name=pyruvate dehydrogenase (lipoamide), mitochondrial irreversible}}
−
{{#set: ec-number=ec-4.2.1.9}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:23, 18 March 2021

Reaction PDHam2mi

  • direction:
    • left-to-right
  • common-name:
    • pyruvate dehydrogenase (lipoamide), mitochondrial irreversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=PDHam2mi&oldid=142345"