Difference between revisions of "PDHe3mr"

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(Created page with "Category:reaction == Reaction TRYPTOPHAN-AMINOTRANSFERASE-RXN == * direction: ** reversible * common-name: ** l-tryptophan:2-oxoglutarate aminotransferase * ec-number: **...")
(Created page with "Category:reaction == Reaction 4.3.1.17-RXN == * direction: ** left-to-right * common-name: ** l-serine ammonia-lyase * ec-number: ** [http://enzyme.expasy.org/EC/4.3.1.17...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRYPTOPHAN-AMINOTRANSFERASE-RXN ==
+
== Reaction 4.3.1.17-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** l-tryptophan:2-oxoglutarate aminotransferase
+
** l-serine ammonia-lyase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.27 ec-2.6.1.27]
+
** [http://enzyme.expasy.org/EC/4.3.1.17 ec-4.3.1.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[TRP]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[INDOLE_PYRUVATE]][c]
+
* 1 [[SER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04188]]
+
* Gene: [[SJ15468]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08066]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-581]], indole-3-acetate biosynthesis II:
 
−
** '''5''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5081]], L-tryptophan degradation VIII (to tryptophol):
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[TRPKYNCAT-PWY]], L-tryptophan degradation IV (via indole-3-lactate):
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TRPIAACAT-PWY]], indole-3-acetate biosynthesis VI (bacteria):
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14096 14096]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19170 19170]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00684 R00684]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00220 R00220]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=l-tryptophan:2-oxoglutarate aminotransferase}}
+
** [http://www.uniprot.org/uniprot/Q7M194 Q7M194]
−
{{#set: ec-number=ec-2.6.1.27}}
+
** [http://www.uniprot.org/uniprot/P30744 P30744]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/Q9JX54 Q9JX54]
−
{{#set: nb pathway associated=4}}
+
** [http://www.uniprot.org/uniprot/P56072 P56072]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P25379 P25379]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P16095 P16095]
 +
** [http://www.uniprot.org/uniprot/P20132 P20132]
 +
** [http://www.uniprot.org/uniprot/P09367 P09367]
 +
** [http://www.uniprot.org/uniprot/Q9PM51 Q9PM51]
 +
** [http://www.uniprot.org/uniprot/P17324 P17324]
 +
** [http://www.uniprot.org/uniprot/P80212 P80212]
 +
** [http://www.uniprot.org/uniprot/P80213 P80213]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=l-serine ammonia-lyase}}
 +
{{#set: ec-number=ec-4.3.1.17}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 19:07, 14 January 2021

Reaction 4.3.1.17-RXN

  • direction:
    • left-to-right
  • common-name:
    • l-serine ammonia-lyase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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