Difference between revisions of "PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN"

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(Created page with "Category:reaction == Reaction GART-RXN == * direction: ** reversible * common-name: ** phosphoribosylglycinamide formyltransferase * ec-number: ** [http://enzyme.expasy.or...")
(Created page with "Category:reaction == Reaction PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11.16 ec-1.14.11.16...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GART-RXN ==
+
== Reaction PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** phosphoribosylglycinamide formyltransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.2 ec-2.1.2.2]
+
** [http://enzyme.expasy.org/EC/1.14.11.16 ec-1.14.11.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''<=>''' 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[Protein-L-Aspartates]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Peptide-3-hydroxy-L-Aspartates]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06408]]
+
* Gene: [[SJ07629]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12047]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09376]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19825]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10867]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6613]], tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR116111
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15056 15056]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11508 11508]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04325 R04325]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04073 R04073]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P21872 P21872]
+
** [http://www.uniprot.org/uniprot/Q28056 Q28056]
−
** [http://www.uniprot.org/uniprot/P00967 P00967]
+
** [http://www.uniprot.org/uniprot/Q93178 Q93178]
−
** [http://www.uniprot.org/uniprot/P16340 P16340]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P22102 P22102]
+
{{#set: ec-number=ec-1.14.11.16}}
−
** [http://www.uniprot.org/uniprot/Q9PIU2 Q9PIU2]
+
{{#set: nb gene associated=5}}
−
** [http://www.uniprot.org/uniprot/Q9JTJ1 Q9JTJ1]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/P43846 P43846]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q42805 Q42805]
 
−
** [http://www.uniprot.org/uniprot/Q9UUK7 Q9UUK7]
 
−
** [http://www.uniprot.org/uniprot/P12040 P12040]
 
−
** [http://www.uniprot.org/uniprot/P08179 P08179]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=phosphoribosylglycinamide formyltransferase}}
 
−
{{#set: ec-number=ec-2.1.2.2}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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