Difference between revisions of "PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYLCOADEHYDROG-RXN ACYLCOADEHYDROG-RXN] == * direction: ** left-to-right * common-name: ** acyl-co...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14049 RXN-14049] == * direction: ** left-to-right * common-name: ** cystathionine gamma-lyase =...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYLCOADEHYDROG-RXN ACYLCOADEHYDROG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14049 RXN-14049] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** acyl-coa dehydrogenase
+
** cystathionine gamma-lyase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.3.8 ec-1.3.8]
 
−
* synonymous:
 
−
** long-chain acyl coenzyme a dehydrogenase
 
−
** general acyl coa dehydrogenase
 
−
** medium-chain acyl-coenzyme a dehydrogenase
 
−
** fatty-acyl-coa dehydrogenase
 
−
** long-chain acyl-coa dehydrogenase
 
−
** acyl coenzyme a dehydrogenase
 
−
** fatty acyl coenzyme a dehydrogenase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
+
* 1 [[HOMO-SER]][c] '''=>''' 1 [[CPD-15056]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ05357]]
−
* Gene: [[SJ07241]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ07909]]
+
* Gene: [[SJ05358]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ21703]]
+
* Gene: [[SJ20026]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ07452]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03090]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19669]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ04334]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06456]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ01215]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06470]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21233]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07451]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15262]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13468]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[FAO-PWY]], fatty acid &beta;-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44705 44705]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24922 24922]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P16219 P16219]
 
−
** [http://www.uniprot.org/uniprot/P45952 P45952]
 
−
** [http://www.uniprot.org/uniprot/P15651 P15651]
 
−
** [http://www.uniprot.org/uniprot/P11310 P11310]
 
−
** [http://www.uniprot.org/uniprot/P08503 P08503]
 
−
** [http://www.uniprot.org/uniprot/Q07417 Q07417]
 
−
** [http://www.uniprot.org/uniprot/Q54857 Q54857]
 
−
** [http://www.uniprot.org/uniprot/P45867 P45867]
 
−
** [http://www.uniprot.org/uniprot/Q9X3R3 Q9X3R3]
 
−
** [http://www.uniprot.org/uniprot/Q9R9I6 Q9R9I6]
 
−
** [http://www.uniprot.org/uniprot/Q96329 Q96329]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=acyl-coa dehydrogenase}}
+
{{#set: common-name=cystathionine gamma-lyase}}
−
{{#set: ec-number=ec-1.3.8}}
+
{{#set: nb gene associated=3}}
−
{{#set: synonymous=medium-chain acyl-coenzyme a dehydrogenase|long-chain acyl coenzyme a dehydrogenase|general acyl coa dehydrogenase|long-chain acyl-coa dehydrogenase|acyl coenzyme a dehydrogenase|fatty acyl coenzyme a dehydrogenase|fatty-acyl-coa dehydrogenase}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=14}}
 
−
{{#set: nb pathway associated=1}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:26, 26 August 2019

Reaction RXN-14049

  • direction:
    • left-to-right
  • common-name:
    • cystathionine gamma-lyase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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