Difference between revisions of "PGIA"
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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-122...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-...") |
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− | [[Category: | + | [[Category:reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] == |
− | * | + | * direction: |
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** isoleucine-trna ligase |
− | == Reaction(s) | + | * ec-number: |
− | * [[ | + | ** [http://enzyme.expasy.org/EC/6.1.1.5 ec-6.1.1.5] |
− | == | + | == Reaction formula == |
− | + | * 1 [[ATP]][c] '''+''' 1 [[ILE]][c] '''+''' 1 [[ILE-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ILE-tRNAs]][c] '''+''' 1 [[PPI]][c] | |
− | {{#set: | + | == Gene(s) associated with this reaction == |
− | {{#set: common-name= | + | * Gene: [[SJ03174]] |
− | {{#set: nb | + | ** Category: [[annotation]] |
− | {{#set: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | {{#set: | + | * Gene: [[SJ16361]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ03173]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | == Pathway(s) == | ||
+ | * [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] | ||
+ | ** '''21''' reactions found over '''21''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11061 11061] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03656 R03656] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P18330 P18330] | ||
+ | ** [http://www.uniprot.org/uniprot/P36422 P36422] | ||
+ | ** [http://www.uniprot.org/uniprot/O29622 O29622] | ||
+ | ** [http://www.uniprot.org/uniprot/P47587 P47587] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZCU4 Q9ZCU4] | ||
+ | ** [http://www.uniprot.org/uniprot/P46213 P46213] | ||
+ | ** [http://www.uniprot.org/uniprot/P41257 P41257] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVY4 Q9JVY4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58357 Q58357] | ||
+ | ** [http://www.uniprot.org/uniprot/O83466 O83466] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z972 Q9Z972] | ||
+ | ** [http://www.uniprot.org/uniprot/P56456 P56456] | ||
+ | ** [http://www.uniprot.org/uniprot/O58792 O58792] | ||
+ | ** [http://www.uniprot.org/uniprot/O84022 O84022] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZJJ1 Q9ZJJ1] | ||
+ | ** [http://www.uniprot.org/uniprot/O66651 O66651] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CEH8 Q9CEH8] | ||
+ | ** [http://www.uniprot.org/uniprot/O27428 O27428] | ||
+ | ** [http://www.uniprot.org/uniprot/Q45477 Q45477] | ||
+ | ** [http://www.uniprot.org/uniprot/O51773 O51773] | ||
+ | ** [http://www.uniprot.org/uniprot/P46207 P46207] | ||
+ | ** [http://www.uniprot.org/uniprot/P41252 P41252] | ||
+ | ** [http://www.uniprot.org/uniprot/P41972 P41972] | ||
+ | ** [http://www.uniprot.org/uniprot/P48526 P48526] | ||
+ | ** [http://www.uniprot.org/uniprot/P75258 P75258] | ||
+ | ** [http://www.uniprot.org/uniprot/P73505 P73505] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49024 Q49024] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49074 Q49074] | ||
+ | ** [http://www.uniprot.org/uniprot/P43824 P43824] | ||
+ | ** [http://www.uniprot.org/uniprot/P09436 P09436] | ||
+ | ** [http://www.uniprot.org/uniprot/P00956 P00956] | ||
+ | ** [http://www.uniprot.org/uniprot/Q94425 Q94425] | ||
+ | </div> | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=isoleucine-trna ligase}} | ||
+ | {{#set: ec-number=ec-6.1.1.5}} | ||
+ | {{#set: nb gene associated=3}} | ||
+ | {{#set: nb pathway associated=1}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 09:32, 27 August 2019
Contents
Reaction ISOLEUCINE--TRNA-LIGASE-RXN
- direction:
- left-to-right
- common-name:
- isoleucine-trna ligase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ03174
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ16361
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ03173
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- TRNA-CHARGING-PWY, tRNA charging: TRNA-CHARGING-PWY
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links