Difference between revisions of "PGIAh"

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(Created page with "Category:reaction == Reaction RXN-11245 == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1...")
(Created page with "Category:reaction == Reaction 5.1.1.18-RXN == * direction: ** left-to-right * common-name: ** serine racemase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.1.18 ec-5.1....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11245 ==
+
== Reaction 5.1.1.18-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-hydroxyacyl-coa dehydrogenase
+
** serine racemase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
+
** [http://enzyme.expasy.org/EC/5.1.1.18 ec-5.1.1.18]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12199]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD-10600]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[SER]][c] '''=>''' 1 [[D-SERINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ15468]]
−
* Gene: [[SJ16470]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03584]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ06127]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16180]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21390]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07211]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17348]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ01444]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6435]], 4-hydroxybenzoate biosynthesis III (plants):
+
* [[PWY-6196]], D-serine metabolism:
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6455]], vancomycin resistance II:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10981 10981]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00589 R00589]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-hydroxyacyl-coa dehydrogenase}}
+
{{#set: common-name=serine racemase}}
−
{{#set: ec-number=ec-1.1.1.35}}
+
{{#set: ec-number=ec-5.1.1.18}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:36, 5 January 2021

Reaction 5.1.1.18-RXN

  • direction:
    • left-to-right
  • common-name:
    • serine racemase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6196, D-serine metabolism:
    • 2 reactions found over 1 reactions in the full pathway
  • PWY-6455, vancomycin resistance II:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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