Difference between revisions of "PGIB"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** trans-octaprenyltranstransferase * ec-number: ** [htt...")
(Created page with "Category:reaction == Reaction RXN-10717 == * direction: ** left-to-right * common-name: ** indole acetaldehyde reductase ** alcohol dehydrogenase (nadp+) * ec-number: ** [...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN ==
+
== Reaction RXN-10717 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** trans-octaprenyltranstransferase
+
** indole acetaldehyde reductase
 +
** alcohol dehydrogenase (nadp+)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.84 ec-2.5.1.84]
+
** [http://enzyme.expasy.org/EC/1.1.1.2 ec-1.1.1.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 7 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 7 [[PPI]][c] '''+''' 1 [[SOLANESYL-PYROPHOSPHATE]][c]
+
* 1 [[INDOLE_ACETALDEHYDE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-341]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19255]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ13034]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ05644]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
* Gene: [[SJ10418]]
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12574]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06456]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10501]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19151]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07103]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06470]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5805]], nonaprenyl diphosphate biosynthesis I:
+
* [[PWY-6307]], L-tryptophan degradation X (mammalian, via tryptamine):
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11325 11325]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R09250 R09250]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=trans-octaprenyltranstransferase}}
+
{{#set: common-name=alcohol dehydrogenase (nadp+)|indole acetaldehyde reductase}}
−
{{#set: ec-number=ec-2.5.1.84}}
+
{{#set: ec-number=ec-1.1.1.2}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=8}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:18, 14 January 2021

Reaction RXN-10717

  • direction:
    • left-to-right
  • common-name:
    • indole acetaldehyde reductase
    • alcohol dehydrogenase (nadp+)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6307, L-tryptophan degradation X (mammalian, via tryptamine):
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=PGIB&oldid=89820"