Difference between revisions of "PHOSNACMURPENTATRANS-RXN"

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(Created page with "Category:reaction == Reaction ASPARTATE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** aspartate-trna ligase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction PHOSNACMURPENTATRANS-RXN == * direction: ** left-to-right * common-name: ** udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelyl-...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ASPARTATE--TRNA-LIGASE-RXN ==
+
== Reaction PHOSNACMURPENTATRANS-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** aspartate-trna ligase
+
** udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelyl-d-alanyl-d-alanine:undecaprenyl-phosphate transferase
 +
** phospho-n-acetylmuramoyl-pentapeptide-transferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.12 ec-6.1.1.12]
+
** [http://enzyme.expasy.org/EC/2.7.8.13 ec-2.7.8.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[C1]][c] '''+''' 1 [[CPD-9646]][c] '''=>''' 1 [[C5]][c] '''+''' 1 [[UMP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22478]]
+
* Gene: [[SJ02910]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03188]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PEPTIDOGLYCANSYN-PWY]], peptidoglycan biosynthesis I (meso-diaminopimelate containing):
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR109725
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19650 19650]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28387 28387]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05630 R05630]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P56459 P56459]
+
** [http://www.uniprot.org/uniprot/Q55986 Q55986]
−
** [http://www.uniprot.org/uniprot/O26328 O26328]
+
** [http://www.uniprot.org/uniprot/P45062 P45062]
−
** [http://www.uniprot.org/uniprot/O83950 O83950]
+
** [http://www.uniprot.org/uniprot/Q03521 Q03521]
−
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
+
** [http://www.uniprot.org/uniprot/O25235 O25235]
−
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
+
** [http://www.uniprot.org/uniprot/Q9JSZ3 Q9JSZ3]
−
** [http://www.uniprot.org/uniprot/O32038 O32038]
+
** [http://www.uniprot.org/uniprot/Q9PI72 Q9PI72]
−
** [http://www.uniprot.org/uniprot/O67589 O67589]
+
** [http://www.uniprot.org/uniprot/P37585 P37585]
−
** [http://www.uniprot.org/uniprot/P43817 P43817]
+
** [http://www.uniprot.org/uniprot/P0A6W3 P0A6W3]
−
** [http://www.uniprot.org/uniprot/O51402 O51402]
 
−
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
 
−
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
 
−
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
 
−
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
 
−
** [http://www.uniprot.org/uniprot/O58776 O58776]
 
−
** [http://www.uniprot.org/uniprot/O84546 O84546]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
 
−
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
 
−
** [http://www.uniprot.org/uniprot/P47282 P47282]
 
−
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
 
−
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
 
−
** [http://www.uniprot.org/uniprot/P36429 P36429]
 
−
** [http://www.uniprot.org/uniprot/P75068 P75068]
 
−
** [http://www.uniprot.org/uniprot/P73851 P73851]
 
−
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
 
−
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
 
−
** [http://www.uniprot.org/uniprot/P04802 P04802]
 
−
** [http://www.uniprot.org/uniprot/P15179 P15179]
 
−
** [http://www.uniprot.org/uniprot/P21889 P21889]
 
−
** [http://www.uniprot.org/uniprot/P14868 P14868]
 
−
** [http://www.uniprot.org/uniprot/P15178 P15178]
 
−
** [http://www.uniprot.org/uniprot/O81892 O81892]
 
−
** [http://www.uniprot.org/uniprot/O74407 O74407]
 
−
** [http://www.uniprot.org/uniprot/O07683 O07683]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=aspartate-trna ligase}}
+
{{#set: common-name=udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelyl-d-alanyl-d-alanine:undecaprenyl-phosphate transferase|phospho-n-acetylmuramoyl-pentapeptide-transferase}}
−
{{#set: ec-number=ec-6.1.1.12}}
+
{{#set: ec-number=ec-2.7.8.13}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction PHOSNACMURPENTATRANS-RXN

  • direction:
    • left-to-right
  • common-name:
    • udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelyl-d-alanyl-d-alanine:undecaprenyl-phosphate transferase
    • phospho-n-acetylmuramoyl-pentapeptide-transferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PEPTIDOGLYCANSYN-PWY, peptidoglycan biosynthesis I (meso-diaminopimelate containing):
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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