Difference between revisions of "PHOSPHASERSYN-RXN"

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(Created page with "Category:reaction == Reaction 3.2.1.58-RXN == * direction: ** left-to-right * common-name: ** glucan exo-1,3-beta-glucosidase ** glucan 1,3-β-glucosidase * ec-number:...")
(Created page with "Category:reaction == Reaction DIHYDROXYMETVALDEHYDRAT-RXN == * direction: ** left-to-right * common-name: ** 2,3-dihydroxy-3-methylvalerate dehydratase ** 2,3-dihydroxy-3-...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.2.1.58-RXN ==
+
== Reaction DIHYDROXYMETVALDEHYDRAT-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glucan exo-1,3-beta-glucosidase
+
** 2,3-dihydroxy-3-methylvalerate dehydratase
−
** glucan 1,3-β-glucosidase
+
** 2,3-dihydroxy-3-methylvalerate hydro-lyase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.58 ec-3.2.1.58]
+
** [http://enzyme.expasy.org/EC/4.2.1.9 ec-4.2.1.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[1-3-beta-D-Glucans]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[1-3-beta-D-Glucans]][c] '''+''' 1 [[ALPHA-GLUCOSE]][c]
+
* 1 [[1-KETO-2-METHYLVALERATE]][c] '''=>''' 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05740]]
+
* Gene: [[SJ19719]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05741]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ18318]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04558]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5103]], L-isoleucine biosynthesis III:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine):
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5101]], L-isoleucine biosynthesis II:
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5104]], L-isoleucine biosynthesis IV:
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27695 27695]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R05070 R05070]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P15703 P15703]
+
** [http://www.uniprot.org/uniprot/P55186 P55186]
−
** [http://www.uniprot.org/uniprot/P23776 P23776]
+
** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
−
** [http://www.uniprot.org/uniprot/P38081 P38081]
+
** [http://www.uniprot.org/uniprot/P05791 P05791]
−
** [http://www.uniprot.org/uniprot/P52911 P52911]
+
** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
−
** [http://www.uniprot.org/uniprot/Q7M4X3 Q7M4X3]
+
** [http://www.uniprot.org/uniprot/P44851 P44851]
−
** [http://www.uniprot.org/uniprot/Q12539 Q12539]
+
** [http://www.uniprot.org/uniprot/Q02139 Q02139]
−
** [http://www.uniprot.org/uniprot/Q12540 Q12540]
+
** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
−
** [http://www.uniprot.org/uniprot/Q42835 Q42835]
+
** [http://www.uniprot.org/uniprot/P39522 P39522]
−
** [http://www.uniprot.org/uniprot/O59898 O59898]
 
−
** [http://www.uniprot.org/uniprot/O82151 O82151]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glucan exo-1,3-beta-glucosidase|glucan 1,3-β-glucosidase}}
+
{{#set: common-name=2,3-dihydroxy-3-methylvalerate dehydratase|2,3-dihydroxy-3-methylvalerate hydro-lyase}}
−
{{#set: ec-number=ec-3.2.1.58}}
+
{{#set: ec-number=ec-4.2.1.9}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:22, 15 January 2021

Reaction DIHYDROXYMETVALDEHYDRAT-RXN

  • direction:
    • left-to-right
  • common-name:
    • 2,3-dihydroxy-3-methylvalerate dehydratase
    • 2,3-dihydroxy-3-methylvalerate hydro-lyase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5103, L-isoleucine biosynthesis III:
    • 3 reactions found over 7 reactions in the full pathway
  • ILEUSYN-PWY, L-isoleucine biosynthesis I (from threonine):
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-5101, L-isoleucine biosynthesis II:
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5104, L-isoleucine biosynthesis IV:
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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