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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction LYSINE--TRNA-LIGASE-RXN == | + | == Reaction ExchangeSeed-MN+2 == |
| | * direction: | | * direction: |
| − | ** left-to-right | + | ** reversible |
| − | * common-name:
| |
| − | ** lysine-trna ligase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/6.1.1.6 ec-6.1.1.6]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[ATP]][c] '''+''' 1 [[LYS]][c] '''+''' 1 [[LYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c] '''+''' 1 [[PPI]][c] | + | * 1.0 [[MN+2]][C-BOUNDARY] '''<=>''' 1.0 [[MN+2]][e] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ21008]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ12237]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ21009]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[TRNA-CHARGING-PWY]], tRNA charging:
| |
| − | ** '''21''' reactions found over '''21''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | {{#set: direction=reversible}} |
| − | * RHEA:
| + | {{#set: nb gene associated=0}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20793 20793]
| + | {{#set: nb pathway associated=0}} |
| − | * LIGAND-RXN:
| + | {{#set: reconstruction category=manual}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
| + | {{#set: reconstruction tool=curation}} |
| − | * UNIPROT:
| + | {{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}} |
| − | ** [http://www.uniprot.org/uniprot/P41258 P41258]
| + | {{#set: reconstruction source=import_from_medium}} |
| − | ** [http://www.uniprot.org/uniprot/P46861 P46861]
| |
| − | ** [http://www.uniprot.org/uniprot/P47382 P47382]
| |
| − | ** [http://www.uniprot.org/uniprot/O57963 O57963]
| |
| − | ** [http://www.uniprot.org/uniprot/O51603 O51603]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
| |
| − | ** [http://www.uniprot.org/uniprot/O83650 O83650]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
| |
| − | ** [http://www.uniprot.org/uniprot/P43825 P43825]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
| |
| − | ** [http://www.uniprot.org/uniprot/O84786 O84786]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
| |
| − | ** [http://www.uniprot.org/uniprot/P56126 P56126]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
| |
| − | ** [http://www.uniprot.org/uniprot/O67258 O67258]
| |
| − | ** [http://www.uniprot.org/uniprot/O84002 O84002]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
| |
| − | ** [http://www.uniprot.org/uniprot/P32048 P32048]
| |
| − | ** [http://www.uniprot.org/uniprot/P37879 P37879]
| |
| − | ** [http://www.uniprot.org/uniprot/Q48986 Q48986]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
| |
| − | ** [http://www.uniprot.org/uniprot/P37477 P37477]
| |
| − | ** [http://www.uniprot.org/uniprot/P75500 P75500]
| |
| − | ** [http://www.uniprot.org/uniprot/P95970 P95970]
| |
| − | ** [http://www.uniprot.org/uniprot/P73443 P73443]
| |
| − | ** [http://www.uniprot.org/uniprot/P15180 P15180]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
| |
| − | ** [http://www.uniprot.org/uniprot/Q43776 Q43776]
| |
| − | ** [http://www.uniprot.org/uniprot/O74059 O74059]
| |
| − | ** [http://www.uniprot.org/uniprot/O30522 O30522]
| |
| − | </div>
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=lysine-trna ligase}}
| |
| − | {{#set: ec-number=ec-6.1.1.6}}
| |
| − | {{#set: nb gene associated=3}} | |
| − | {{#set: nb pathway associated=1}} | |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | |
