Difference between revisions of "PINA1tm"

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(Created page with "Category:reaction == Reaction BIOTIN-CARBOXYL-RXN == * direction: ** left-to-right * common-name: ** biotin carboxylase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4....")
(Created page with "Category:reaction == Reaction SERINE-O-ACETTRAN-RXN == * direction: ** left-to-right * common-name: ** serine acetyltransferase * ec-number: ** [http://enzyme.expasy.org/E...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BIOTIN-CARBOXYL-RXN ==
+
== Reaction SERINE-O-ACETTRAN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** biotin carboxylase
+
** serine acetyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.14 ec-6.3.4.14]
+
** [http://enzyme.expasy.org/EC/2.3.1.30 ec-2.3.1.30]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[ACETYLSERINE]][c] '''+''' 1 [[CO-A]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ14528]]
+
* Gene: [[SJ14691]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12870]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02214]]
+
* Gene: [[SJ15518]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12670]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17987]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ00485]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ14529]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00718]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06726]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14890]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5744]], glyoxylate assimilation:
+
* [[PWY-7870]], L-cysteine biosynthesis VII (from S-sulfo-L-cysteine):
−
** '''4''' reactions found over '''13''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5743]], 3-hydroxypropanoate cycle:
+
* [[PWY-7274]], D-cycloserine biosynthesis:
−
** '''5''' reactions found over '''13''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
+
* [[CYSTSYN-PWY]], L-cysteine biosynthesis I:
−
** '''8''' reactions found over '''18''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly:
+
* [[PWY-6936]], seleno-amino acid biosynthesis (plants):
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR104275
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13502 13502]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24560 24560]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04385 R04385]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00586 R00586]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q06862 Q06862]
+
** [http://www.uniprot.org/uniprot/Q39533 Q39533]
−
** [http://www.uniprot.org/uniprot/O67483 O67483]
+
** [http://www.uniprot.org/uniprot/Q06750 Q06750]
−
** [http://www.uniprot.org/uniprot/Q9CHF3 Q9CHF3]
+
** [http://www.uniprot.org/uniprot/P71405 P71405]
−
** [http://www.uniprot.org/uniprot/Q58626 Q58626]
+
** [http://www.uniprot.org/uniprot/Q9JR86 Q9JR86]
−
** [http://www.uniprot.org/uniprot/P43873 P43873]
+
** [http://www.uniprot.org/uniprot/Q9PPF6 Q9PPF6]
−
** [http://www.uniprot.org/uniprot/Q9PN09 Q9PN09]
+
** [http://www.uniprot.org/uniprot/P23145 P23145]
−
** [http://www.uniprot.org/uniprot/Q9JW07 Q9JW07]
+
** [http://www.uniprot.org/uniprot/Q9CEI8 Q9CEI8]
−
** [http://www.uniprot.org/uniprot/P24182 P24182]
+
** [http://www.uniprot.org/uniprot/P43886 P43886]
−
** [http://www.uniprot.org/uniprot/O04983 O04983]
+
** [http://www.uniprot.org/uniprot/P32003 P32003]
−
** [http://www.uniprot.org/uniprot/O81273 O81273]
+
** [http://www.uniprot.org/uniprot/P29847 P29847]
−
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
+
** [http://www.uniprot.org/uniprot/Q42588 Q42588]
−
** [http://www.uniprot.org/uniprot/Q39825 Q39825]
+
** [http://www.uniprot.org/uniprot/Q39218 Q39218]
−
** [http://www.uniprot.org/uniprot/O23960 O23960]
+
** [http://www.uniprot.org/uniprot/Q42538 Q42538]
−
** [http://www.uniprot.org/uniprot/O52602 O52602]
+
** [http://www.uniprot.org/uniprot/P74089 P74089]
−
** [http://www.uniprot.org/uniprot/Q9R9I4 Q9R9I4]
+
** [http://www.uniprot.org/uniprot/Q8W2B8 Q8W2B8]
 +
** [http://www.uniprot.org/uniprot/Q8S895 Q8S895]
 +
** [http://www.uniprot.org/uniprot/P93544 P93544]
 +
** [http://www.uniprot.org/uniprot/O69218 O69218]
 +
** [http://www.uniprot.org/uniprot/O32979 O32979]
 +
** [http://www.uniprot.org/uniprot/P0A9D4 P0A9D4]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=biotin carboxylase}}
+
{{#set: common-name=serine acetyltransferase}}
−
{{#set: ec-number=ec-6.3.4.14}}
+
{{#set: ec-number=ec-2.3.1.30}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=4}}
 
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 08:39, 15 March 2021

Reaction SERINE-O-ACETTRAN-RXN

  • direction:
    • left-to-right
  • common-name:
    • serine acetyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7870, L-cysteine biosynthesis VII (from S-sulfo-L-cysteine):
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7274, D-cycloserine biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • CYSTSYN-PWY, L-cysteine biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6936, seleno-amino acid biosynthesis (plants):
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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