Difference between revisions of "PNKIN-RXN"

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(Created page with "Category:reaction == Reaction RXN1A0-6303 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.3.1 ec-1.3.1] == Reaction formula == * 1 Hepta-...")
(Created page with "Category:reaction == Reaction GDPPYPHOSKIN-RXN == * direction: ** left-to-right * common-name: ** gdp pyrophosphokinase ** gtp diphosphokinase * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN1A0-6303 ==
+
== Reaction GDPPYPHOSKIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** gdp pyrophosphokinase
 +
** gtp diphosphokinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.1 ec-1.3.1]
+
** [http://enzyme.expasy.org/EC/2.7.6.5 ec-2.7.6.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Hepta-oxo-hexadecanoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Actinorhodin-Intermediate-2]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GDP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[GUANOSINE-5DP-3DP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19012]]
+
* Gene: [[SJ13961]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ15799]]
+
* Gene: [[SJ10100]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07200]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14690]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY1A0-6325]], actinorhodin biosynthesis:
+
* [[PPGPPMET-PWY]], ppGpp metabolism:
−
** '''1''' reactions found over '''12''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28099 28099]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.3.1}}
+
{{#set: common-name=gdp pyrophosphokinase|gtp diphosphokinase}}
−
{{#set: nb gene associated=2}}
+
{{#set: ec-number=ec-2.7.6.5}}
 +
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:23, 15 January 2021

Reaction GDPPYPHOSKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • gdp pyrophosphokinase
    • gtp diphosphokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PPGPPMET-PWY, ppGpp metabolism:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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