Difference between revisions of "PNPOXI-RXN"

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(Created page with "Category:reaction == Reaction RXN-7737 == * direction: ** reversible * common-name: ** l,l-diaminopimelate aminotransferase * ec-number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:reaction == Reaction MMUM-RXN == * direction: ** left-to-right * common-name: ** homocysteine s-methyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-7737 ==
+
== Reaction MMUM-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** l,l-diaminopimelate aminotransferase
+
** homocysteine s-methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.83 ec-2.6.1.83]
+
** [http://enzyme.expasy.org/EC/2.1.1.10 ec-2.1.1.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CPD-397]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 2 [[MET]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ20803]]
+
* Gene: [[SJ07112]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20802]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5097]], L-lysine biosynthesis VI:
+
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine:
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5441]], S-methyl-L-methionine cycle:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-702]], L-methionine biosynthesis II (plants):
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23991 23991]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26338 26338]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R07613 R07613]
+
{{#set: common-name=homocysteine s-methyltransferase}}
−
{{#set: direction=reversible}}
+
{{#set: ec-number=ec-2.1.1.10}}
−
{{#set: common-name=l,l-diaminopimelate aminotransferase}}
+
{{#set: nb gene associated=1}}
−
{{#set: ec-number=ec-2.6.1.83}}
+
{{#set: nb pathway associated=3}}
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=1}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:21, 15 January 2021

Reaction MMUM-RXN

  • direction:
    • left-to-right
  • common-name:
    • homocysteine s-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ADENOSYLHOMOCYSCAT-PWY, L-methionine salvage from L-homocysteine:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5441, S-methyl-L-methionine cycle:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-702, L-methionine biosynthesis II (plants):
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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