Difference between revisions of "PNPOXI-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.8-RXN 1.1.1.8-RXN] == * direction: ** left-to-right * common-name: ** glycerol 3-phosphate de...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN] == * direction: ** reversi...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.8-RXN 1.1.1.8-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** glycerol 3-phosphate dehydrogenase
+
** pyruvate phosphate dikinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.8 ec-1.1.1.8]
+
** [http://enzyme.expasy.org/EC/2.7.9.1 ec-2.7.9.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[NAD]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[AMP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16475]]
+
* Gene: [[SJ06759]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00878]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6118]], glycerol-3-phosphate shuttle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6118 PWY-6118]
+
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
+
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7411]], phosphatidate biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7411 PWY-7411]
+
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10756 10756]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00842 R00842]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00206 R00206]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P13707 P13707]
+
** [http://www.uniprot.org/uniprot/Q7M0I6 Q7M0I6]
−
** [http://www.uniprot.org/uniprot/P08507 P08507]
+
** [http://www.uniprot.org/uniprot/O23404 O23404]
−
** [http://www.uniprot.org/uniprot/O25614 O25614]
+
** [http://www.uniprot.org/uniprot/Q9WYA9 Q9WYA9]
−
** [http://www.uniprot.org/uniprot/Q9JWH0 Q9JWH0]
+
** [http://www.uniprot.org/uniprot/P22983 P22983]
−
** [http://www.uniprot.org/uniprot/P43798 P43798]
+
** [http://www.uniprot.org/uniprot/Q41846 Q41846]
−
** [http://www.uniprot.org/uniprot/O29390 O29390]
+
** [http://www.uniprot.org/uniprot/Q42367 Q42367]
−
** [http://www.uniprot.org/uniprot/P46919 P46919]
+
** [http://www.uniprot.org/uniprot/Q42368 Q42368]
−
** [http://www.uniprot.org/uniprot/P07735 P07735]
+
** [http://www.uniprot.org/uniprot/P22221 P22221]
−
** [http://www.uniprot.org/uniprot/P13706 P13706]
+
** [http://www.uniprot.org/uniprot/P37213 P37213]
−
** [http://www.uniprot.org/uniprot/Q00055 Q00055]
+
** [http://www.uniprot.org/uniprot/Q42736 Q42736]
−
** [http://www.uniprot.org/uniprot/P34517 P34517]
+
** [http://www.uniprot.org/uniprot/Q42910 Q42910]
−
** [http://www.uniprot.org/uniprot/P0A6S7 P0A6S7]
+
** [http://www.uniprot.org/uniprot/Q39734 Q39734]
−
** [http://www.uniprot.org/uniprot/P21695 P21695]
+
** [http://www.uniprot.org/uniprot/Q39735 Q39735]
−
** [http://www.uniprot.org/uniprot/P41911 P41911]
+
** [http://www.uniprot.org/uniprot/O24612 O24612]
−
** [http://www.uniprot.org/uniprot/P90593 P90593]
+
** [http://www.uniprot.org/uniprot/O85840 O85840]
−
{{#set: direction=left-to-right}}
+
</div>
−
{{#set: common-name=glycerol 3-phosphate dehydrogenase}}
+
{{#set: direction=reversible}}
−
{{#set: ec-number=ec-1.1.1.8}}
+
{{#set: common-name=pyruvate phosphate dikinase}}
−
{{#set: nb gene associated=2}}
+
{{#set: ec-number=ec-2.7.9.1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 14:26, 26 August 2019

Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN

  • direction:
    • reversible
  • common-name:
    • pyruvate phosphate dikinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type: PWY-241
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 9 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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