Difference between revisions of "POLYNUCLEOTIDE-3-PHOSPHATASE-RXN"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17203 RXN-17203] == * direction: ** reversible * common-name: ** galactosylceramide sulfotransf...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHENYLTHFCYCLOHYDRO-RXN METHENYLTHFCYCLOHYDRO-RXN] == * direction: ** reversible * common-name: *...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHENYLTHFCYCLOHYDRO-RXN METHENYLTHFCYCLOHYDRO-RXN] == |
* direction: | * direction: | ||
** reversible | ** reversible | ||
* common-name: | * common-name: | ||
− | ** | + | ** methenyltetrahydrofolate cyclohydrolase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/3.5.4.9 ec-3.5.4.9] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ12991]] | |
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− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | * Gene: [[SJ10799]] | |
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− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ17385]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ11954]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | == Pathway(s) == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497] | ||
+ | ** '''10''' reactions found over '''24''' reactions in the full pathway | ||
+ | * [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY] | ||
+ | ** '''6''' reactions found over '''17''' reactions in the full pathway | ||
+ | * [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY] | ||
+ | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5030]], L-histidine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5030 PWY-5030] | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7909]], formaldehyde oxidation VII (THF pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7909 PWY-7909] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841] | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-6613]], tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6613 PWY-6613] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1722 PWY-1722] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
</div> | </div> | ||
− | |||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23703 23703] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01655 R01655] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P09440 P09440] | ||
+ | ** [http://www.uniprot.org/uniprot/P07245 P07245] | ||
+ | ** [http://www.uniprot.org/uniprot/P11586 P11586] | ||
+ | ** [http://www.uniprot.org/uniprot/P18155 P18155] | ||
+ | ** [http://www.uniprot.org/uniprot/P44313 P44313] | ||
+ | ** [http://www.uniprot.org/uniprot/P47259 P47259] | ||
+ | ** [http://www.uniprot.org/uniprot/P13995 P13995] | ||
+ | ** [http://www.uniprot.org/uniprot/P54382 P54382] | ||
+ | ** [http://www.uniprot.org/uniprot/O67736 O67736] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWI9 Q9JWI9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PP68 Q9PP68] | ||
+ | ** [http://www.uniprot.org/uniprot/P24186 P24186] | ||
+ | ** [http://www.uniprot.org/uniprot/Q04448 Q04448] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60006 Q60006] | ||
+ | ** [http://www.uniprot.org/uniprot/Q27772 Q27772] | ||
+ | ** [http://www.uniprot.org/uniprot/P51696 P51696] | ||
+ | ** [http://www.uniprot.org/uniprot/O68031 O68031] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZTV0 Q9ZTV0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X7F6 Q9X7F6] | ||
+ | </div> | ||
{{#set: direction=reversible}} | {{#set: direction=reversible}} | ||
− | {{#set: common-name= | + | {{#set: common-name=methenyltetrahydrofolate cyclohydrolase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-3.5.4.9}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=4}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=10}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
− | {{#set: reconstruction tool=pathwaytools | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 14:27, 26 August 2019
Contents
Reaction METHENYLTHFCYCLOHYDRO-RXN
- direction:
- reversible
- common-name:
- methenyltetrahydrofolate cyclohydrolase
- ec-number:
Reaction formula
- 1 5-10-METHENYL-THF-GLU-N[c] + 1 WATER[c] <=> 1 FORMYL-THF-GLU-N[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ12991
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ10799
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ17385
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ11954
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- 1CMET2-PWY, N10-formyl-tetrahydrofolate biosynthesis: 1CMET2-PWY
- 8 reactions found over 9 reactions in the full pathway
- PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
- 10 reactions found over 24 reactions in the full pathway
- P164-PWY, purine nucleobases degradation I (anaerobic): P164-PWY
- 6 reactions found over 17 reactions in the full pathway
- CODH-PWY, reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): CODH-PWY
- 4 reactions found over 9 reactions in the full pathway
- PWY-5030, L-histidine degradation III: PWY-5030
- 3 reactions found over 6 reactions in the full pathway
- PWY-7909, formaldehyde oxidation VII (THF pathway): PWY-7909
- 3 reactions found over 4 reactions in the full pathway
- PWY-3841, folate transformations II: PWY-3841
- 9 reactions found over 11 reactions in the full pathway
- PWY-2201, folate transformations I: PWY-2201
- 9 reactions found over 12 reactions in the full pathway
- PWY-6613, tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate: PWY-6613
- 2 reactions found over 2 reactions in the full pathway
- PWY-1722, formate assimilation into 5,10-methylenetetrahydrofolate: PWY-1722
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links