Difference between revisions of "POLYNUCLEOTIDE-5-PHOSPHATASE-RXN"

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(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN == * direction: ** reversible * common-name: ** valine transaminase * ec-number: ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction POLYNUCLEOTIDE-5-PHOSPHATASE-RXN == * direction: ** left-to-right * common-name: ** polynucleotide 5'-phosphatase * ec-number: ** [http://enz...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN ==
+
== Reaction POLYNUCLEOTIDE-5-PHOSPHATASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** valine transaminase
+
** polynucleotide 5'-phosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42]
+
** [http://enzyme.expasy.org/EC/3.1.3.33 ec-3.1.3.33]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[VAL]][c] '''<=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[GLT]][c]
+
* 1 [[5-ppp-Pur-mRNA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-8630]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17677]]
+
* Gene: [[SJ05217]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06412]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04586]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[VALSYN-PWY]], L-valine biosynthesis:
+
* [[PWY-7375]], mRNA capping I:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[ALANINE-VALINESYN-PWY]], L-alanine biosynthesis I:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5057]], L-valine degradation II:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[VALDEG-PWY]], L-valine degradation I:
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR116142
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24816 24816]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01214 R01214]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02249 R02249]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
+
{{#set: common-name=polynucleotide 5'-phosphatase}}
−
** [http://www.uniprot.org/uniprot/P38891 P38891]
+
{{#set: ec-number=ec-3.1.3.33}}
−
** [http://www.uniprot.org/uniprot/P47176 P47176]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/O86505 O86505]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/O14370 O14370]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/O32954 O32954]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=valine transaminase}}
 
−
{{#set: ec-number=ec-2.6.1.42}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction POLYNUCLEOTIDE-5-PHOSPHATASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • polynucleotide 5'-phosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7375, mRNA capping I:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR116142
  • LIGAND-RXN:





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