Difference between revisions of "POLYNUCLEOTIDE-5-PHOSPHATASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-2542 == * direction: ** left-to-right * common-name: ** 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction PPPGO == * direction: ** left-to-right * common-name: ** protoporphyrinogen ix oxidase == Reaction formula == * 3.0 OXYGEN-MOLECULE[h] ''...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-2542 ==
+
== Reaction PPPGO ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase
+
** protoporphyrinogen ix oxidase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.1.1.295 ec-2.1.1.295]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MPBQ]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DMPBQ]][c] '''+''' 1 [[PROTON]][c]
+
* 3.0 [[OXYGEN-MOLECULE]][h] '''+''' 1.0 [[PROTOPORPHYRINOGEN]][h] '''=>''' 3.0 [[HYDROGEN-PEROXIDE]][h] '''+''' 1.0 [[PROTOPORPHYRIN_IX]][h]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ01024]]
+
* Gene: [[SJ21798]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10416]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15772]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-1422]], vitamin E biosynthesis (tocopherols):
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=37980 37980]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R07501 R07501]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2-methyl-6-phytyl-1,4-benzoquinone methyltransferase}}
+
{{#set: common-name=protoporphyrinogen ix oxidase}}
−
{{#set: ec-number=ec-2.1.1.295}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 15:36, 5 January 2021

Reaction PPPGO

  • direction:
    • left-to-right
  • common-name:
    • protoporphyrinogen ix oxidase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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