Difference between revisions of "POLYNUCLEOTIDE-ADENYLYLTRANSFERASE-RXN"

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(Created page with "Category:reaction == Reaction PYRUVDEH-RXN == * direction: ** left-to-right * common-name: ** pyruvate dehydrogenase (nad+) * ec-number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:reaction == Reaction POLYNUCLEOTIDE-ADENYLYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** poly(a) polymerase * ec-number: ** [http://enzyme.e...")
 
(4 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRUVDEH-RXN ==
+
== Reaction POLYNUCLEOTIDE-ADENYLYLTRANSFERASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** pyruvate dehydrogenase (nad+)
+
** poly(a) polymerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1 ec-1.2.1]
+
** [http://enzyme.expasy.org/EC/2.7.7.19 ec-2.7.7.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[mRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[mRNAs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ00971]]
+
* Gene: [[SJ13196]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ01042]]
+
* Gene: [[SJ20166]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19470]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ13629]]
+
* Gene: [[SJ09393]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02953]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21225]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ09312]]
+
* Gene: [[SJ12521]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ14925]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06474]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10087]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10725]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]], superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass:
 
−
** '''3''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
 
−
** '''7''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5482]], pyruvate fermentation to acetate II:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5537]], pyruvate fermentation to acetate V:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered):
 
−
** '''8''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR116143
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28042 28042]
+
* UNIPROT:
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/P44439 P44439]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00209 R00209]
+
** [http://www.uniprot.org/uniprot/Q9I5A6 Q9I5A6]
 +
** [http://www.uniprot.org/uniprot/Q9I657 Q9I657]
 +
** [http://www.uniprot.org/uniprot/Q9JV08 Q9JV08]
 +
** [http://www.uniprot.org/uniprot/Q9KVV5 Q9KVV5]
 +
** [http://www.uniprot.org/uniprot/P0ABF1 P0ABF1]
 +
** [http://www.uniprot.org/uniprot/Q9CFC2 Q9CFC2]
 +
** [http://www.uniprot.org/uniprot/P07617 P07617]
 +
** [http://www.uniprot.org/uniprot/P32129 P32129]
 +
** [http://www.uniprot.org/uniprot/Q98199 Q98199]
 +
** [http://www.uniprot.org/uniprot/Q98244 Q98244]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=pyruvate dehydrogenase (nad+)}}
+
{{#set: common-name=poly(a) polymerase}}
−
{{#set: ec-number=ec-1.2.1}}
+
{{#set: ec-number=ec-2.7.7.19}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction POLYNUCLEOTIDE-ADENYLYLTRANSFERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • poly(a) polymerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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