Difference between revisions of "PPENTOMUT-RXN"

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(Created page with "Category:reaction == Reaction PHOSNACMURPENTATRANS-RXN == * direction: ** left-to-right * common-name: ** udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelyl-...")
(Created page with "Category:reaction == Reaction PPENTOMUT-RXN == * direction: ** reversible * common-name: ** α-d-ribose 1,5-phosphomutase * ec-number: ** [http://enzyme.expasy.org/EC...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PHOSNACMURPENTATRANS-RXN ==
+
== Reaction PPENTOMUT-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelyl-d-alanyl-d-alanine:undecaprenyl-phosphate transferase
+
** α-d-ribose 1,5-phosphomutase
−
** phospho-n-acetylmuramoyl-pentapeptide-transferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.8.13 ec-2.7.8.13]
+
** [http://enzyme.expasy.org/EC/5.4.2.7 ec-5.4.2.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[C1]][c] '''+''' 1 [[CPD-9646]][c] '''=>''' 1 [[C5]][c] '''+''' 1 [[UMP]][c]
+
* 1 [[RIBOSE-1P]][c] '''<=>''' 1 [[RIBOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02910]]
+
* Gene: [[SJ05004]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PEPTIDOGLYCANSYN-PWY]], peptidoglycan biosynthesis I (meso-diaminopimelate containing):
+
* [[PWY0-661]]:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY0-1296]], purine ribonucleosides degradation:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR141225
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28387 28387]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18796 18796]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05630 R05630]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01057 R01057]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q55986 Q55986]
+
** [http://www.uniprot.org/uniprot/Q9CH12 Q9CH12]
−
** [http://www.uniprot.org/uniprot/P45062 P45062]
+
** [http://www.uniprot.org/uniprot/O24821 O24821]
−
** [http://www.uniprot.org/uniprot/Q03521 Q03521]
+
** [http://www.uniprot.org/uniprot/P0A6K6 P0A6K6]
−
** [http://www.uniprot.org/uniprot/O25235 O25235]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q9JSZ3 Q9JSZ3]
+
{{#set: common-name=&alpha;-d-ribose 1,5-phosphomutase}}
−
** [http://www.uniprot.org/uniprot/Q9PI72 Q9PI72]
+
{{#set: ec-number=ec-5.4.2.7}}
−
** [http://www.uniprot.org/uniprot/P37585 P37585]
 
−
** [http://www.uniprot.org/uniprot/P0A6W3 P0A6W3]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=phospho-n-acetylmuramoyl-pentapeptide-transferase|udp-n-acetylmuramoyl-l-alanyl-d-glutamyl-meso-2,6-diaminopimelyl-d-alanyl-d-alanine:undecaprenyl-phosphate transferase}}
 
−
{{#set: ec-number=ec-2.7.8.13}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction PPENTOMUT-RXN

  • direction:
    • reversible
  • common-name:
    • α-d-ribose 1,5-phosphomutase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-661:
    • 1 reactions found over n.a reactions in the full pathway
  • PWY0-1296, purine ribonucleosides degradation:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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