Difference between revisions of "PPGPPSYN-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALDOSE-1-EPIMERASE-RXN ALDOSE-1-EPIMERASE-RXN] == * direction: ** reversible * common-name: ** aldo...")
 
(Created page with "Category:reaction == Reaction PPGPPSYN-RXN == * direction: ** left-to-right * common-name: ** guanosine-3',5'-bis(diphosphate) 3'-diphosphatase * ec-number: ** [http://enz...")
 
(9 intermediate revisions by 4 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALDOSE-1-EPIMERASE-RXN ALDOSE-1-EPIMERASE-RXN] ==
+
== Reaction PPGPPSYN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** aldose 1-epimerase
+
** guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.1.3.3 ec-5.1.3.3]
+
** [http://enzyme.expasy.org/EC/3.1.7.2 ec-3.1.7.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ALPHA-GLUCOSE]][c] '''<=>''' 1 [[GLC]][c]
+
* 1 [[GUANOSINE-5DP-3DP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GDP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17177]]
+
* Gene: [[SJ10100]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14690]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07200]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13961]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1466]], trehalose degradation VI (periplasmic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1466 PWY0-1466]
+
* [[PPGPPMET-PWY]], ppGpp metabolism:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR103109
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10264 10264]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14254 14254]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01602 R01602]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00336 R00336]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P05149 P05149]
+
** [http://www.uniprot.org/uniprot/Q9PN26 Q9PN26]
−
** [http://www.uniprot.org/uniprot/Q8X8E4 Q8X8E4]
+
** [http://www.uniprot.org/uniprot/Q9JT97 Q9JT97]
−
** [http://www.uniprot.org/uniprot/P21955 P21955]
+
** [http://www.uniprot.org/uniprot/P43811 P43811]
−
** [http://www.uniprot.org/uniprot/P31765 P31765]
+
** [http://www.uniprot.org/uniprot/P0AG24 P0AG24]
−
** [http://www.uniprot.org/uniprot/Q9CFG9 Q9CFG9]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P0A9C3 P0A9C3]
+
{{#set: common-name=guanosine-3',5'-bis(diphosphate) 3'-diphosphatase}}
−
** [http://www.uniprot.org/uniprot/Q9JSW7 Q9JSW7]
+
{{#set: ec-number=ec-3.1.7.2}}
−
** [http://www.uniprot.org/uniprot/Q9WYB8 Q9WYB8]
+
{{#set: nb gene associated=4}}
−
** [http://www.uniprot.org/uniprot/Q9CE62 Q9CE62]
 
−
** [http://www.uniprot.org/uniprot/Q7M2P6 Q7M2P6]
 
−
** [http://www.uniprot.org/uniprot/O48971 O48971]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=aldose 1-epimerase}}
 
−
{{#set: ec-number=ec-5.1.3.3}}
 
−
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction PPGPPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PPGPPMET-PWY, ppGpp metabolism:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=PPGPPSYN-RXN&oldid=141388"