Difference between revisions of "PPGPPSYN-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-902 == * direction: ** left-to-right * common-name: ** phenylitaconyl-coa hydratase ** enoyl-coa hydratase * ec-number: ** [http://enzyme...")
(Created page with "Category:reaction == Reaction PPGPPSYN-RXN == * direction: ** left-to-right * common-name: ** guanosine-3',5'-bis(diphosphate) 3'-diphosphatase * ec-number: ** [http://enz...")
 
(5 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-902 ==
+
== Reaction PPGPPSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phenylitaconyl-coa hydratase
+
** guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
−
** enoyl-coa hydratase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
+
** [http://enzyme.expasy.org/EC/3.1.7.2 ec-3.1.7.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[E-PHENYLITACONYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CARBOXYMETHYL-HYDROXYPHENYLPROPCOA]][c]
+
* 1 [[GUANOSINE-5DP-3DP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GDP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ10100]]
−
* Gene: [[SJ10275]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03913]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ14690]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03584]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ14591]]
+
* Gene: [[SJ07200]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ21390]]
+
* Gene: [[SJ13961]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07211]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-81]], toluene degradation to benzoyl-CoA (anaerobic):
+
* [[PPGPPMET-PWY]], ppGpp metabolism:
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR103109
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14254 14254]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05599 R05599]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00336 R00336]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9PN26 Q9PN26]
 +
** [http://www.uniprot.org/uniprot/Q9JT97 Q9JT97]
 +
** [http://www.uniprot.org/uniprot/P43811 P43811]
 +
** [http://www.uniprot.org/uniprot/P0AG24 P0AG24]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phenylitaconyl-coa hydratase|enoyl-coa hydratase}}
+
{{#set: common-name=guanosine-3',5'-bis(diphosphate) 3'-diphosphatase}}
−
{{#set: ec-number=ec-4.2.1.17}}
+
{{#set: ec-number=ec-3.1.7.2}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=4}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction PPGPPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PPGPPMET-PWY, ppGpp metabolism:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=PPGPPSYN-RXN&oldid=141388"