Difference between revisions of "PPGPPSYN-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-8642 == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> * direction: ** reversible * common-name:...")
(Created page with "Category:reaction == Reaction PPGPPSYN-RXN == * direction: ** left-to-right * common-name: ** guanosine-3',5'-bis(diphosphate) 3'-diphosphatase * ec-number: ** [http://enz...")
 
(4 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8642 ==
+
== Reaction PPGPPSYN-RXN ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** nadp-dependent isocitrate dehydrogenase
+
** guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
−
* synonymous:
+
* ec-number:
−
** idp
+
** [http://enzyme.expasy.org/EC/3.1.7.2 ec-3.1.7.2]
−
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 
−
** idp1
 
−
** isocitrate (nadp) dehydrogenase
 
−
** nadp+-icdh
 
−
** nadp isocitric dehydrogenase
 
−
** idp2
 
−
** nadp+-linked isocitrate dehydrogenase
 
−
** nadp-linked isocitrate dehydrogenase
 
−
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 
−
** nadp-specific isocitrate dehydrogenase
 
−
** nadp-dependent isocitric dehydrogenase
 
−
** dual-cofactor-specific isocitrate dehydrogenase
 
−
** idh (ambiguous)
 
−
** isocitrate dehydrogenase (nadp-dependent)
 
−
** idp3
 
−
** nadp+-idh
 
−
** oxalsuccinic decarboxylase
 
−
</div>
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[GUANOSINE-5DP-3DP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GDP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08749]]
+
* Gene: [[SJ10100]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14690]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07200]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13961]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PPGPPMET-PWY]], ppGpp metabolism:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR103109
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19384 19384]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14254 14254]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00336 R00336]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=nadp-dependent isocitrate dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/Q9PN26 Q9PN26]
−
{{#set: synonymous=nadp-linked isocitrate dehydrogenase|nadp-dependent isocitric dehydrogenase|idp2|nadp-specific isocitrate dehydrogenase|nadp+-icdh|idp|nadp+-idh|nadp isocitric dehydrogenase|idp1|isocitrate (nadp) dehydrogenase|isocitrate dehydrogenase (nadp-dependent)|idp3|nadp+-linked isocitrate dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|dual-cofactor-specific isocitrate dehydrogenase|idh (ambiguous)|oxalsuccinic decarboxylase}}
+
** [http://www.uniprot.org/uniprot/Q9JT97 Q9JT97]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/P43811 P43811]
−
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/P0AG24 P0AG24]
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: direction=left-to-right}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: common-name=guanosine-3',5'-bis(diphosphate) 3'-diphosphatase}}
 +
{{#set: ec-number=ec-3.1.7.2}}
 +
{{#set: nb gene associated=4}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction PPGPPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PPGPPMET-PWY, ppGpp metabolism:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=PPGPPSYN-RXN&oldid=141388"