Difference between revisions of "PPGPPSYN-RXN"

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(Created page with "Category:reaction == Reaction RXN-902 == * direction: ** left-to-right * common-name: ** phenylitaconyl-coa hydratase ** enoyl-coa hydratase * ec-number: ** [http://enzyme...")
(Created page with "Category:reaction == Reaction RXN-8642 == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> * direction: ** reversible * common-name:...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-902 ==
+
== Reaction RXN-8642 ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** phenylitaconyl-coa hydratase
+
** nadp-dependent isocitrate dehydrogenase
−
** enoyl-coa hydratase
+
* synonymous:
−
* ec-number:
+
** idp
−
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
+
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** idp1
 +
** isocitrate (nadp) dehydrogenase
 +
** nadp+-icdh
 +
** nadp isocitric dehydrogenase
 +
** idp2
 +
** nadp+-linked isocitrate dehydrogenase
 +
** nadp-linked isocitrate dehydrogenase
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** nadp-specific isocitrate dehydrogenase
 +
** nadp-dependent isocitric dehydrogenase
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
** idh (ambiguous)
 +
** isocitrate dehydrogenase (nadp-dependent)
 +
** idp3
 +
** nadp+-idh
 +
** oxalsuccinic decarboxylase
 +
</div>
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[E-PHENYLITACONYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CARBOXYMETHYL-HYDROXYPHENYLPROPCOA]][c]
+
* 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ08749]]
−
* Gene: [[SJ10275]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03913]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03584]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21390]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07211]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-81]], toluene degradation to benzoyl-CoA (anaerobic):
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19384 19384]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05599 R05599]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00268 R00268]
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=phenylitaconyl-coa hydratase|enoyl-coa hydratase}}
+
{{#set: common-name=nadp-dependent isocitrate dehydrogenase}}
−
{{#set: ec-number=ec-4.2.1.17}}
+
{{#set: synonymous=nadp-linked isocitrate dehydrogenase|nadp-dependent isocitric dehydrogenase|idp2|nadp-specific isocitrate dehydrogenase|nadp+-icdh|idp|nadp+-idh|nadp isocitric dehydrogenase|idp1|isocitrate (nadp) dehydrogenase|isocitrate dehydrogenase (nadp-dependent)|idp3|nadp+-linked isocitrate dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|dual-cofactor-specific isocitrate dehydrogenase|idh (ambiguous)|oxalsuccinic decarboxylase}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:34, 5 January 2021

Reaction RXN-8642

  • direction:
    • reversible
  • common-name:
    • nadp-dependent isocitrate dehydrogenase
  • synonymous:
    • idp
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • idp1
    • isocitrate (nadp) dehydrogenase
    • nadp+-icdh
    • nadp isocitric dehydrogenase
    • idp2
    • nadp+-linked isocitrate dehydrogenase
    • nadp-linked isocitrate dehydrogenase
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • nadp-specific isocitrate dehydrogenase
    • nadp-dependent isocitric dehydrogenase
    • dual-cofactor-specific isocitrate dehydrogenase
    • idh (ambiguous)
    • isocitrate dehydrogenase (nadp-dependent)
    • idp3
    • nadp+-idh
    • oxalsuccinic decarboxylase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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