Difference between revisions of "PRAISOM-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN] == * direction: ** reversi...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-461 RXN1F-461] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYBUTYRATE-DEHYDROGENASE-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-461 RXN1F-461] ==
 
* direction:
 
* direction:
−
** reversible
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** left-to-right
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* common-name:
 
−
** 3-hydroxybutyrate dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.30 ec-1.1.1.30]
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** [http://enzyme.expasy.org/EC/2.4.1.91 ec-2.4.1.91]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-335]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-KETOBUTYRATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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* 1 [[CPD-12575]][c] '''+''' 1 [[CPD1F-90]][c] '''=>''' 1 [[CPD1F-453]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[SJ06217]]
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* Gene: [[SJ20292]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20291]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05277]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21312]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05276]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10028]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05275]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05274]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21322]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06127]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-368]], ketolysis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-368 PWY66-368]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a [http://metacyc.org/META/NEW-IMAGE?object=PWY-7168 PWY-7168]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
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** '''1''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367]
+
* [[PWY-7143]], kaempferol gentiobioside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7143 PWY-7143]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
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** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5348]], kaempferol triglucoside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5348 PWY-5348]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5320]], kaempferol glycoside biosynthesis (Arabidopsis): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5320 PWY-5320]
 +
** '''1''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=left-to-right}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20524 20524]
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{{#set: ec-number=ec-2.4.1.91}}
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* LIGAND-RXN:
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{{#set: nb gene associated=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01361 R01361]
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{{#set: nb pathway associated=4}}
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* UNIPROT:
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{{#set: reconstruction category=orthology}}
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** [http://www.uniprot.org/uniprot/P29147 P29147]
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{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/Q02338 Q02338]
 
−
** [http://www.uniprot.org/uniprot/Q02337 Q02337]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=3-hydroxybutyrate dehydrogenase}}
 
−
{{#set: ec-number=ec-1.1.1.30}}
 
−
{{#set: nb gene associated=10}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:26, 26 August 2019

Reaction RXN1F-461

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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