Difference between revisions of "PRECURSOR-Z"

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(Created page with "Category:gene == Gene SJ12228 == * transcription-direction: ** positive * right-end-position: ** 736005 * left-end-position: ** 733210 * centisome-position: ** 95.85722...")
(Created page with "Category:metabolite == Metabolite CPD-17388 == * common-name: ** 3-oxo-(6z,9z,12z,15z,18z,21z)-tetracosahexaenoyl-coa * smiles: ** ccc=ccc=ccc=ccc=ccc=ccc=cccc(=o)cc(sccnc...")
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ12228 ==
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== Metabolite CPD-17388 ==
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* transcription-direction:
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* common-name:
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** positive
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** 3-oxo-(6z,9z,12z,15z,18z,21z)-tetracosahexaenoyl-coa
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* right-end-position:
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* smiles:
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** 736005
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** ccc=ccc=ccc=ccc=ccc=ccc=cccc(=o)cc(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-])=o
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* left-end-position:
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* inchi-key:
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** 733210
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** dnhdpaxpqgygij-kwfbmmabsa-j
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* centisome-position:
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* molecular-weight:
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** 95.85722   
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** 1116.018
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-16137]]
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== Reaction(s) associated ==
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== Reaction(s) known to produce the compound ==
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* [[RXN-13908]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=3-oxo-(6z,9z,12z,15z,18z,21z)-tetracosahexaenoyl-coa}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: inchi-key=inchikey=dnhdpaxpqgygij-kwfbmmabsa-j}}
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** Category: [[orthology]]
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{{#set: molecular-weight=1116.018}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-7908]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== Pathway(s) associated ==
 
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* [[PWY-7158]]
 
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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* [[PHENYLALANINE-DEG1-PWY]]
 
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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{{#set: transcription-direction=positive}}
 
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{{#set: right-end-position=736005}}
 
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{{#set: left-end-position=733210}}
 
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{{#set: centisome-position=95.85722    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=2}}
 
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{{#set: nb pathway associated=2}}
 

Revision as of 20:31, 18 December 2020

Metabolite CPD-17388

  • common-name:
    • 3-oxo-(6z,9z,12z,15z,18z,21z)-tetracosahexaenoyl-coa
  • smiles:
    • ccc=ccc=ccc=ccc=ccc=ccc=cccc(=o)cc(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-])=o
  • inchi-key:
    • dnhdpaxpqgygij-kwfbmmabsa-j
  • molecular-weight:
    • 1116.018

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

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