Difference between revisions of "PREPHENATEDEHYDROG-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17334 RXN-17334] == * direction: ** left-to-right == Reaction formula == * 1 CPD-18762[c] '...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-KINASE-RXN CHOLINE-KINASE-RXN] == * direction: ** left-to-right * common-name: ** choline k...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17334 RXN-17334] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-KINASE-RXN CHOLINE-KINASE-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** choline kinase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.7.1.32 ec-2.7.1.32]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-18762]][c] '''=>''' 1 [[CPD-18733]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CHOLINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18127]]
+
* Gene: [[SJ18340]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19505]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[SJ15347]]
−
* Gene: [[SJ12861]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7407]], aurachin A, B, C and D biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7407 PWY-7407]
+
* [[PWY-7782]], plasmalogen biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7782 PWY-7782]
−
** '''2''' reactions found over '''11''' reactions in the full pathway
+
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY3O-450]], phosphatidylcholine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-450 PWY3O-450]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7818]], type IV lipoteichoic acid biosynthesis (S. pneumoniae): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7818 PWY-7818]
 +
** '''2''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-7886]], cell-surface glycoconjugate-linked phosphocholine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7886 PWY-7886]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=49021 49021]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12838 12838]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01021 R01021]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P20485 P20485]
 +
** [http://www.uniprot.org/uniprot/Q01134 Q01134]
 +
** [http://www.uniprot.org/uniprot/Q42809 Q42809]
 +
** [http://www.uniprot.org/uniprot/Q42810 Q42810]
 +
** [http://www.uniprot.org/uniprot/Q42811 Q42811]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=3}}
+
{{#set: common-name=choline kinase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: ec-number=ec-2.7.1.32}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction CHOLINE-KINASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • choline kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7782, plasmalogen biosynthesis: PWY-7782
    • 11 reactions found over 16 reactions in the full pathway
  • PWY3O-450, phosphatidylcholine biosynthesis I: PWY3O-450
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7818, type IV lipoteichoic acid biosynthesis (S. pneumoniae): PWY-7818
    • 2 reactions found over 19 reactions in the full pathway
  • PWY-7886, cell-surface glycoconjugate-linked phosphocholine biosynthesis: PWY-7886
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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