Difference between revisions of "PROGESTERONE-5-ALPHA-REDUCTASE-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.21-RXN 3.2.1.21-RXN] == * direction: ** left-to-right * common-name: ** beta-glucosidase ** &...")
(Created page with "Category:reaction == Reaction NARINGENIN-CHALCONE-SYNTHASE-RXN == * direction: ** left-to-right * common-name: ** naringenin-chalcone synthase * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.21-RXN 3.2.1.21-RXN] ==
+
== Reaction NARINGENIN-CHALCONE-SYNTHASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** beta-glucosidase
+
** naringenin-chalcone synthase
−
** β-d-glucoside glucohydrolase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.21 ec-3.2.1.21]
+
** [http://enzyme.expasy.org/EC/2.3.1.74 ec-2.3.1.74]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Beta-D-glucosides]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[Non-Glucosylated-Glucose-Acceptors]][c]
+
* 3 [[MALONYL-COA]][c] '''+''' 1 [[P-COUMAROYL-COA]][c] '''+''' 3 [[PROTON]][c] '''=>''' 3 [[CARBON-DIOXIDE]][c] '''+''' 4 [[CO-A]][c] '''+''' 1 [[CPD-20012]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ18059]]
−
* Gene: [[SJ00855]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14193]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05533]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17199]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05257]]
+
* Gene: [[SJ20077]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18897]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05782]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05532]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04559]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04558]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ14973]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18318]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05741]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11958]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16402]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05740]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19930]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6787]], flavonoid biosynthesis (in equisetum):
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5135]], xanthohumol biosynthesis:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7397]], naringenin biosynthesis (engineered):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6316]], aromatic polyketides biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7897]], flavonoid di-C-glucosylation:
 +
** '''3''' reactions found over '''15''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11129 11129]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01613 R01613]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P29091 P29091]
+
** [http://www.uniprot.org/uniprot/Q43188 Q43188]
−
** [http://www.uniprot.org/uniprot/P29090 P29090]
+
** [http://www.uniprot.org/uniprot/O04934 O04934]
−
** [http://www.uniprot.org/uniprot/P27034 P27034]
+
** [http://www.uniprot.org/uniprot/P17957 P17957]
−
** [http://www.uniprot.org/uniprot/P16084 P16084]
+
** [http://www.uniprot.org/uniprot/P30081 P30081]
−
** [http://www.uniprot.org/uniprot/Q03506 Q03506]
+
** [http://www.uniprot.org/uniprot/P30080 P30080]
−
** [http://www.uniprot.org/uniprot/Q23892 Q23892]
+
** [http://www.uniprot.org/uniprot/Q9S9C0 Q9S9C0]
−
** [http://www.uniprot.org/uniprot/Q9CFI7 Q9CFI7]
+
** [http://www.uniprot.org/uniprot/Q9S9B9 Q9S9B9]
−
** [http://www.uniprot.org/uniprot/P22507 P22507]
+
** [http://www.uniprot.org/uniprot/P23419 P23419]
−
** [http://www.uniprot.org/uniprot/P33363 P33363]
+
** [http://www.uniprot.org/uniprot/P26018 P26018]
−
** [http://www.uniprot.org/uniprot/Q9WXN2 Q9WXN2]
+
** [http://www.uniprot.org/uniprot/P22928 P22928]
−
** [http://www.uniprot.org/uniprot/Q9CFL0 Q9CFL0]
+
** [http://www.uniprot.org/uniprot/P30079 P30079]
−
** [http://www.uniprot.org/uniprot/Q9CJ31 Q9CJ31]
+
** [http://www.uniprot.org/uniprot/Q01287 Q01287]
−
** [http://www.uniprot.org/uniprot/P12614 P12614]
+
** [http://www.uniprot.org/uniprot/Q01288 Q01288]
−
** [http://www.uniprot.org/uniprot/P06835 P06835]
+
** [http://www.uniprot.org/uniprot/P51078 P51078]
−
** [http://www.uniprot.org/uniprot/P26205 P26205]
+
** [http://www.uniprot.org/uniprot/P51080 P51080]
−
** [http://www.uniprot.org/uniprot/P26204 P26204]
+
** [http://www.uniprot.org/uniprot/P30078 P30078]
−
** [http://www.uniprot.org/uniprot/P07337 P07337]
+
** [http://www.uniprot.org/uniprot/Q01286 Q01286]
−
** [http://www.uniprot.org/uniprot/Q8X8G6 Q8X8G6]
+
** [http://www.uniprot.org/uniprot/P30073 P30073]
−
** [http://www.uniprot.org/uniprot/Q12653 Q12653]
+
** [http://www.uniprot.org/uniprot/P30074 P30074]
−
** [http://www.uniprot.org/uniprot/P48825 P48825]
+
** [http://www.uniprot.org/uniprot/P30076 P30076]
−
** [http://www.uniprot.org/uniprot/P94248 P94248]
+
** [http://www.uniprot.org/uniprot/P30077 P30077]
−
** [http://www.uniprot.org/uniprot/O24749 O24749]
+
** [http://www.uniprot.org/uniprot/P51089 P51089]
−
** [http://www.uniprot.org/uniprot/Q9SPK3 Q9SPK3]
+
** [http://www.uniprot.org/uniprot/P51075 P51075]
−
** [http://www.uniprot.org/uniprot/P22073 P22073]
+
** [http://www.uniprot.org/uniprot/P16107 P16107]
−
** [http://www.uniprot.org/uniprot/P22505 P22505]
+
** [http://www.uniprot.org/uniprot/P51077 P51077]
−
** [http://www.uniprot.org/uniprot/P96316 P96316]
+
** [http://www.uniprot.org/uniprot/P51079 P51079]
−
** [http://www.uniprot.org/uniprot/P10482 P10482]
+
** [http://www.uniprot.org/uniprot/P30075 P30075]
−
** [http://www.uniprot.org/uniprot/P14002 P14002]
+
** [http://www.uniprot.org/uniprot/P51081 P51081]
−
** [http://www.uniprot.org/uniprot/P15885 P15885]
+
** [http://www.uniprot.org/uniprot/P51082 P51082]
−
** [http://www.uniprot.org/uniprot/P26208 P26208]
+
** [http://www.uniprot.org/uniprot/P48390 P48390]
−
** [http://www.uniprot.org/uniprot/Q41172 Q41172]
+
** [http://www.uniprot.org/uniprot/P48405 P48405]
−
** [http://www.uniprot.org/uniprot/Q7M0Q7 Q7M0Q7]
+
** [http://www.uniprot.org/uniprot/P48406 P48406]
−
** [http://www.uniprot.org/uniprot/Q08638 Q08638]
+
** [http://www.uniprot.org/uniprot/P23569 P23569]
−
** [http://www.uniprot.org/uniprot/Q9S9H4 Q9S9H4]
+
** [http://www.uniprot.org/uniprot/P13416 P13416]
−
** [http://www.uniprot.org/uniprot/Q59976 Q59976]
+
** [http://www.uniprot.org/uniprot/P13417 P13417]
−
** [http://www.uniprot.org/uniprot/Q59437 Q59437]
+
** [http://www.uniprot.org/uniprot/P17818 P17818]
−
** [http://www.uniprot.org/uniprot/Q42618 Q42618]
+
** [http://www.uniprot.org/uniprot/P13114 P13114]
−
** [http://www.uniprot.org/uniprot/Q42975 Q42975]
+
** [http://www.uniprot.org/uniprot/P08894 P08894]
−
** [http://www.uniprot.org/uniprot/Q40984 Q40984]
+
** [http://www.uniprot.org/uniprot/P22924 P22924]
−
** [http://www.uniprot.org/uniprot/Q43073 Q43073]
+
** [http://www.uniprot.org/uniprot/P22925 P22925]
−
** [http://www.uniprot.org/uniprot/O82074 O82074]
+
** [http://www.uniprot.org/uniprot/P22926 P22926]
−
** [http://www.uniprot.org/uniprot/O24524 O24524]
+
** [http://www.uniprot.org/uniprot/P22927 P22927]
−
** [http://www.uniprot.org/uniprot/Q8CJM3 Q8CJM3]
+
** [http://www.uniprot.org/uniprot/P06515 P06515]
−
** [http://www.uniprot.org/uniprot/Q9X9R4 Q9X9R4]
+
** [http://www.uniprot.org/uniprot/P24826 P24826]
−
** [http://www.uniprot.org/uniprot/O68843 O68843]
+
** [http://www.uniprot.org/uniprot/P19168 P19168]
−
** [http://www.uniprot.org/uniprot/O82772 O82772]
+
** [http://www.uniprot.org/uniprot/P24825 P24825]
−
** [http://www.uniprot.org/uniprot/O49117 O49117]
+
** [http://www.uniprot.org/uniprot/P24824 P24824]
 +
** [http://www.uniprot.org/uniprot/Q40005 Q40005]
 +
** [http://www.uniprot.org/uniprot/Q96562 Q96562]
 +
** [http://www.uniprot.org/uniprot/O22047 O22047]
 +
** [http://www.uniprot.org/uniprot/O04971 O04971]
 +
** [http://www.uniprot.org/uniprot/P48389 P48389]
 +
** [http://www.uniprot.org/uniprot/P48398 P48398]
 +
** [http://www.uniprot.org/uniprot/P48399 P48399]
 +
** [http://www.uniprot.org/uniprot/Q96568 Q96568]
 +
** [http://www.uniprot.org/uniprot/P48397 P48397]
 +
** [http://www.uniprot.org/uniprot/O04966 O04966]
 +
** [http://www.uniprot.org/uniprot/O04967 O04967]
 +
** [http://www.uniprot.org/uniprot/O04968 O04968]
 +
** [http://www.uniprot.org/uniprot/O04969 O04969]
 +
** [http://www.uniprot.org/uniprot/O04970 O04970]
 +
** [http://www.uniprot.org/uniprot/Q41292 Q41292]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=beta-glucosidase|&beta;-d-glucoside glucohydrolase}}
+
{{#set: common-name=naringenin-chalcone synthase}}
−
{{#set: ec-number=ec-3.2.1.21}}
+
{{#set: ec-number=ec-2.3.1.74}}
−
{{#set: nb gene associated=17}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=6}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:40, 18 December 2020

Reaction NARINGENIN-CHALCONE-SYNTHASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • naringenin-chalcone synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6787, flavonoid biosynthesis (in equisetum):
    • 6 reactions found over 10 reactions in the full pathway
  • PWY1F-FLAVSYN, flavonoid biosynthesis:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5135, xanthohumol biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7397, naringenin biosynthesis (engineered):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6316, aromatic polyketides biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7897, flavonoid di-C-glucosylation:
    • 3 reactions found over 15 reactions in the full pathway

Reconstruction information

External links





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