Difference between revisions of "PROLINE--TRNA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFOCYS-RXN SULFOCYS-RXN] == * direction: ** reversible * common-name: ** cysteine synthase * ec-n...")
 
(Created page with "Category:reaction == Reaction PROLINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** proline-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFOCYS-RXN SULFOCYS-RXN] ==
+
== Reaction PROLINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** cysteine synthase
+
** proline-trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.bw ec-2.5.1.bw]
+
** [http://enzyme.expasy.org/EC/6.1.1.15 ec-6.1.1.15]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYLSERINE]][c] '''+''' 1 [[S2O3]][c] '''<=>''' 1 [[ACET]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SULFO-CYSTEINE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[PRO-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-PRO-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ08366]]
−
* Gene: [[SJ01657]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20026]]
+
* Gene: [[SJ16508]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15937]]
+
* Gene: [[SJ16507]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16706]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7870]], L-cysteine biosynthesis VII (from S-sulfo-L-cysteine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7870 PWY-7870]
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR116156
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30894 30894]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14306 14306]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03132 R03132]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03661 R03661]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=cysteine synthase}}
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** [http://www.uniprot.org/uniprot/O51363 O51363]
−
{{#set: ec-number=ec-2.5.1.bw}}
+
** [http://www.uniprot.org/uniprot/O58734 O58734]
−
{{#set: nb gene associated=4}}
+
** [http://www.uniprot.org/uniprot/Q9ZMJ6 Q9ZMJ6]
 +
** [http://www.uniprot.org/uniprot/P43830 P43830]
 +
** [http://www.uniprot.org/uniprot/P47525 P47525]
 +
** [http://www.uniprot.org/uniprot/O26708 O26708]
 +
** [http://www.uniprot.org/uniprot/Q9JU09 Q9JU09]
 +
** [http://www.uniprot.org/uniprot/Q58635 Q58635]
 +
** [http://www.uniprot.org/uniprot/P56124 P56124]
 +
** [http://www.uniprot.org/uniprot/O83195 O83195]
 +
** [http://www.uniprot.org/uniprot/Q9Z851 Q9Z851]
 +
** [http://www.uniprot.org/uniprot/O31755 O31755]
 +
** [http://www.uniprot.org/uniprot/P36431 P36431]
 +
** [http://www.uniprot.org/uniprot/Q9ZDE7 Q9ZDE7]
 +
** [http://www.uniprot.org/uniprot/Q9PHX1 Q9PHX1]
 +
** [http://www.uniprot.org/uniprot/Q9CDT4 Q9CDT4]
 +
** [http://www.uniprot.org/uniprot/Q9WYY4 Q9WYY4]
 +
** [http://www.uniprot.org/uniprot/P75382 P75382]
 +
** [http://www.uniprot.org/uniprot/Q49090 Q49090]
 +
** [http://www.uniprot.org/uniprot/P07814 P07814]
 +
** [http://www.uniprot.org/uniprot/P16659 P16659]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=proline-trna ligase}}
 +
{{#set: ec-number=ec-6.1.1.15}}
 +
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction PROLINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • proline-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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