Difference between revisions of "PROPANOL"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9679 RXN-9679] == * direction: ** left-to-right * common-name: ** sarcosine n-methyltransferase...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.39-RXN 1.1.1.39-RXN] == * direction: ** left-to-right * common-name: ** malate dehydrogenase...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9679 RXN-9679] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.39-RXN 1.1.1.39-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** sarcosine n-methyltransferase
+
** malate dehydrogenase (decarboxylating) (nad+)
−
** sarcosine-dimethylglycine methyltransferase
+
** oxaloacetate decarboxylase
−
* synonymous:
+
** malate dehydrogenase, nad-requiring
−
** apdmt
+
* ec-number:
−
** s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
+
** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
−
** sarcosine dimethylglycine n-methyltransferase
+
** [http://enzyme.expasy.org/EC/1.1.1.39 ec-1.1.1.39]
−
** glycine-sarcosine methyltransferase
 
−
** gsmt
 
−
** glycine sarcosine n-methyltransferase
 
−
** glycine sarcosine dimethylglycine n-methyltransferase
 
−
** gmt
 
−
** s-adenosyl-l-methionine:sarcosine n-methyltransferase
 
−
** sdmt
 
−
** apgsmt
 
−
** gsdmt
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[SARCOSINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ14191]]
−
* Gene: [[SJ11087]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12128]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13180]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ02540]]
+
* Gene: [[SJ11643]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02539]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12119]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ10116]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12116]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03081]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ18177]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12118]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ14716]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=P541-PWY P541-PWY]
+
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6004 PWY-6004]
+
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7686]], L-malate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7686 PWY-7686]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-3641]], L-carnitine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3641 PWY-3641]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15454 15454]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12654 12654]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q48662 Q48662]
 +
** [http://www.uniprot.org/uniprot/Q9PN12 Q9PN12]
 +
** [http://www.uniprot.org/uniprot/O59029 O59029]
 +
** [http://www.uniprot.org/uniprot/P16468 P16468]
 +
** [http://www.uniprot.org/uniprot/Q9CGB2 Q9CGB2]
 +
** [http://www.uniprot.org/uniprot/P26616 P26616]
 +
** [http://www.uniprot.org/uniprot/Q9JVE6 Q9JVE6]
 +
** [http://www.uniprot.org/uniprot/P37224 P37224]
 +
** [http://www.uniprot.org/uniprot/P37225 P37225]
 +
** [http://www.uniprot.org/uniprot/P37221 P37221]
 +
** [http://www.uniprot.org/uniprot/Q7M1T9 Q7M1T9]
 +
** [http://www.uniprot.org/uniprot/Q9M162 Q9M162]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07243 R07243]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=sarcosine n-methyltransferase|sarcosine-dimethylglycine methyltransferase}}
+
{{#set: common-name=malate dehydrogenase (decarboxylating) (nad+)|malate dehydrogenase, nad-requiring|oxaloacetate decarboxylase}}
−
{{#set: synonymous=glycine-sarcosine methyltransferase|s-adenosyl-l-methionine:sarcosine n-methyltransferase|glycine sarcosine dimethylglycine n-methyltransferase|apgsmt|gmt|glycine sarcosine n-methyltransferase|sarcosine dimethylglycine n-methyltransferase|gsmt|gsdmt|apdmt|sdmt|s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase}}
+
{{#set: ec-number=ec-1.1.1.39|ec-1.1.1.38}}
−
{{#set: nb gene associated=11}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=6}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:28, 27 August 2019

Reaction 1.1.1.39-RXN

  • direction:
    • left-to-right
  • common-name:
    • malate dehydrogenase (decarboxylating) (nad+)
    • oxaloacetate decarboxylase
    • malate dehydrogenase, nad-requiring
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7118, chitin degradation to ethanol: PWY-7118
    • 5 reactions found over 6 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-7686, L-malate degradation II: PWY-7686
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-3641, L-carnitine degradation III: PWY-3641
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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