Difference between revisions of "PROSTAGLANDIN-D-SYNTHASE-RXN"

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(Created page with "Category:reaction == Reaction 1.1.1.8-RXN == * direction: ** left-to-right * common-name: ** glycerol 3-phosphate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction DTDPGLUCDEHYDRAT-RXN == * direction: ** left-to-right * common-name: ** dtdp-glucose 4,6-dehydratase * ec-number: ** [http://enzyme.expasy.or...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.1.1.8-RXN ==
+
== Reaction DTDPGLUCDEHYDRAT-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glycerol 3-phosphate dehydrogenase
+
** dtdp-glucose 4,6-dehydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.8 ec-1.1.1.8]
+
** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[NAD]][c]
+
* 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16475]]
+
* Gene: [[SJ10476]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16241]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00878]]
+
* Gene: [[SJ00231]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6118]], glycerol-3-phosphate shuttle:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
* [[PWY-6808]], dTDP-D-forosamine biosynthesis:
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered):
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7657]], dTDP-&beta;-L-digitoxose biosynthesis:
−
* [[PWY-7411]], phosphatidate biosynthesis (yeast):
+
** '''1''' reactions found over '''7''' reactions in the full pathway
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-7104]], dTDP-L-megosamine biosynthesis:
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6974]], dTDP-L-olivose biosynthesis:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6976]], dTDP-L-mycarose biosynthesis:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6953]], dTDP-3-acetamido-&alpha;-D-fucose biosynthesis:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7414]], dTDP-&alpha;-D-mycaminose biosynthesis:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6942]], dTDP-D-desosamine biosynthesis:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7440]], dTDP-&beta;-L-4-epi-vancosamine biosynthesis:
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis:
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-3221]]:
 +
** '''1''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-7413]], dTDP-6-deoxy-&alpha;-D-allose biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7312]], dTDP-D-&beta;-fucofuranose biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7301]], dTDP-4-O-demethyl-&beta;-L-noviose biosynthesis:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00842 R00842]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P13707 P13707]
+
** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1]
−
** [http://www.uniprot.org/uniprot/P08507 P08507]
+
** [http://www.uniprot.org/uniprot/P44914 P44914]
−
** [http://www.uniprot.org/uniprot/O25614 O25614]
+
** [http://www.uniprot.org/uniprot/P29782 P29782]
−
** [http://www.uniprot.org/uniprot/Q9JWH0 Q9JWH0]
+
** [http://www.uniprot.org/uniprot/P27830 P27830]
−
** [http://www.uniprot.org/uniprot/P43798 P43798]
+
** [http://www.uniprot.org/uniprot/P55294 P55294]
−
** [http://www.uniprot.org/uniprot/O29390 O29390]
+
** [http://www.uniprot.org/uniprot/Q9S642 Q9S642]
−
** [http://www.uniprot.org/uniprot/P46919 P46919]
+
** [http://www.uniprot.org/uniprot/P37759 P37759]
−
** [http://www.uniprot.org/uniprot/P07735 P07735]
+
** [http://www.uniprot.org/uniprot/P26391 P26391]
−
** [http://www.uniprot.org/uniprot/P13706 P13706]
+
** [http://www.uniprot.org/uniprot/Q59626 Q59626]
−
** [http://www.uniprot.org/uniprot/Q00055 Q00055]
+
** [http://www.uniprot.org/uniprot/P39630 P39630]
−
** [http://www.uniprot.org/uniprot/P34517 P34517]
+
** [http://www.uniprot.org/uniprot/P37777 P37777]
−
** [http://www.uniprot.org/uniprot/P0A6S7 P0A6S7]
+
** [http://www.uniprot.org/uniprot/P37761 P37761]
−
** [http://www.uniprot.org/uniprot/P21695 P21695]
+
** [http://www.uniprot.org/uniprot/Q54144 Q54144]
−
** [http://www.uniprot.org/uniprot/P41911 P41911]
+
** [http://www.uniprot.org/uniprot/Q56173 Q56173]
−
** [http://www.uniprot.org/uniprot/P90593 P90593]
+
** [http://www.uniprot.org/uniprot/Q55420 Q55420]
 +
** [http://www.uniprot.org/uniprot/P55293 P55293]
 +
** [http://www.uniprot.org/uniprot/O66249 O66249]
 +
** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4]
 +
** [http://www.uniprot.org/uniprot/O08246 O08246]
 +
** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28]
 +
** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glycerol 3-phosphate dehydrogenase}}
+
{{#set: common-name=dtdp-glucose 4,6-dehydratase}}
−
{{#set: ec-number=ec-1.1.1.8}}
+
{{#set: ec-number=ec-4.2.1.46}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=20}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:07, 5 January 2021

Reaction DTDPGLUCDEHYDRAT-RXN

  • direction:
    • left-to-right
  • common-name:
    • dtdp-glucose 4,6-dehydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6808, dTDP-D-forosamine biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7657, dTDP-β-L-digitoxose biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7104, dTDP-L-megosamine biosynthesis:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6973, dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6974, dTDP-L-olivose biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6976, dTDP-L-mycarose biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6953, dTDP-3-acetamido-α-D-fucose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7414, dTDP-α-D-mycaminose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7315, dTDP-N-acetylthomosamine biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7318, dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6942, dTDP-D-desosamine biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7440, dTDP-β-L-4-epi-vancosamine biosynthesis:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7814, dTDP-L-daunosamine biosynthesis:
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-3221:
    • 1 reactions found over n.a reactions in the full pathway
  • PWY-7413, dTDP-6-deoxy-α-D-allose biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7312, dTDP-D-β-fucofuranose biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7316, dTDP-N-acetylviosamine biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • DTDPRHAMSYN-PWY, dTDP-L-rhamnose biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7688, dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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