Difference between revisions of "PROSTAGLANDIN-E-SYNTHASE-RXN"
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(Created page with "Category:reaction == Reaction RXN-9530 == * direction: ** left-to-right * common-name: ** trans-δ2-decenoyl-[acp]reductase (nadph, b-specific) ** fatty acid synthase...") |
(Created page with "Category:reaction == Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** serine palmitoyltransferase * ec-number: ** [http://enzy...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** serine palmitoyltransferase |
− | |||
− | |||
* ec-number: | * ec-number: | ||
− | + | ** [http://enzyme.expasy.org/EC/2.3.1.50 ec-2.3.1.50] | |
− | |||
− | |||
− | ** [http://enzyme.expasy.org/EC/2.3.1. | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * Gene: [[ | + | * Gene: [[SJ01689]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ05058]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ13300]] |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | ** Category: [[ | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | *** Source: [[ | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | + | * Gene: [[SJ01690]] | |
− | *** Source: [[ | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | *** Source: [[ | ||
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
− | |||
− | |||
− | ** Category: [[ | ||
− | *** Source: [[ | ||
− | |||
− | |||
− | |||
</div> | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY3DJ-12]], ceramide de novo biosynthesis: |
− | ** ''' | + | ** '''2''' reactions found over '''4''' reactions in the full pathway |
+ | * [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): | ||
+ | ** '''4''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-5129]], sphingolipid biosynthesis (plants): | ||
+ | ** '''4''' reactions found over '''13''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14762 14762] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P25045 P25045] | ||
+ | ** [http://www.uniprot.org/uniprot/O15270 O15270] | ||
+ | ** [http://www.uniprot.org/uniprot/P48241 P48241] | ||
+ | ** [http://www.uniprot.org/uniprot/Q09925 Q09925] | ||
+ | ** [http://www.uniprot.org/uniprot/P40970 P40970] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q20375 Q20375] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9M304 Q9M304] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=serine palmitoyltransferase}} |
− | {{#set: ec-number= | + | {{#set: ec-number=ec-2.3.1.50}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=4}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:27, 15 January 2021
Contents
Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN
- direction:
- left-to-right
- common-name:
- serine palmitoyltransferase
- ec-number:
Reaction formula
- 1 PALMITYL-COA[c] + 1 PROTON[c] + 1 SER[c] => 1 CARBON-DIOXIDE[c] + 1 CO-A[c] + 1 DEHYDROSPHINGANINE[c]
Gene(s) associated with this reaction
- Gene: SJ01689
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ05058
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ13300
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ01690
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY3DJ-12, ceramide de novo biosynthesis:
- 2 reactions found over 4 reactions in the full pathway
- SPHINGOLIPID-SYN-PWY, sphingolipid biosynthesis (yeast):
- 4 reactions found over 11 reactions in the full pathway
- PWY-5129, sphingolipid biosynthesis (plants):
- 4 reactions found over 13 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links