Difference between revisions of "PROSTAGLANDIN-E2-9-REDUCTASE-RXN"

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(Created page with "Category:reaction == Reaction MALONYL-COA-ACP-TRANSACYL-RXN == * direction: ** left-to-right * common-name: ** fatty acid synthase ** malonyl-coa-acp transacylase * ec-num...")
(Created page with "Category:reaction == Reaction DIHYDRODIPICSYN-RXN == * direction: ** left-to-right * common-name: ** 4-hydroxy-tetrahydrodipicolinate synthase * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction MALONYL-COA-ACP-TRANSACYL-RXN ==
+
== Reaction DIHYDRODIPICSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** fatty acid synthase
+
** 4-hydroxy-tetrahydrodipicolinate synthase
−
** malonyl-coa-acp transacylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/4.3.3.7 ec-4.3.3.7]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
+
* synonymous:
−
** [http://enzyme.expasy.org/EC/2.3.1.39 ec-2.3.1.39]
+
** dihydrodipicolinic acid synthase
 +
** dihydropicolinate synthetase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACP]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MALONYL-ACP]][c]
+
* 1 [[L-ASPARTATE-SEMIALDEHYDE]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CPD-14443]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ18863]]
−
* Gene: [[SJ13014]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06944]]
+
* Gene: [[SJ21231]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11672]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00320]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04769]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00613]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19629]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04443]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17743]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03883]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
+
* [[PWY-5097]], L-lysine biosynthesis VI:
−
** '''7''' reactions found over '''11''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-4381]], fatty acid biosynthesis initiation (bacteria and plants):
+
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6799]], fatty acid biosynthesis initiation (plant mitochondria):
+
* [[PWY-2941]], L-lysine biosynthesis II:
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2942]], L-lysine biosynthesis III:
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01626 R01626]
+
** [http://www.genome.jp/dbget-bin/www_bget?R10147 R10147]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P72391 P72391]
+
** [http://www.uniprot.org/uniprot/P43797 P43797]
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
+
** [http://www.uniprot.org/uniprot/O26892 O26892]
−
** [http://www.uniprot.org/uniprot/O34825 O34825]
+
** [http://www.uniprot.org/uniprot/Q9Z6K9 Q9Z6K9]
−
** [http://www.uniprot.org/uniprot/Q9RT24 Q9RT24]
+
** [http://www.uniprot.org/uniprot/Q9X1K9 Q9X1K9]
−
** [http://www.uniprot.org/uniprot/Q9JW58 Q9JW58]
+
** [http://www.uniprot.org/uniprot/P19808 P19808]
−
** [http://www.uniprot.org/uniprot/P0AAI9 P0AAI9]
+
** [http://www.uniprot.org/uniprot/Q9ZM13 Q9ZM13]
−
** [http://www.uniprot.org/uniprot/O24916 O24916]
+
** [http://www.uniprot.org/uniprot/O05969 O05969]
−
** [http://www.uniprot.org/uniprot/Q9JXR4 Q9JXR4]
+
** [http://www.uniprot.org/uniprot/Q9CF61 Q9CF61]
−
** [http://www.uniprot.org/uniprot/Q9ZCJ6 Q9ZCJ6]
+
** [http://www.uniprot.org/uniprot/Q04796 Q04796]
−
** [http://www.uniprot.org/uniprot/Q9YBK5 Q9YBK5]
+
** [http://www.uniprot.org/uniprot/Q57695 Q57695]
−
** [http://www.uniprot.org/uniprot/Q9PJ11 Q9PJ11]
+
** [http://www.uniprot.org/uniprot/O25657 O25657]
−
** [http://www.uniprot.org/uniprot/P43712 P43712]
+
** [http://www.uniprot.org/uniprot/O67216 O67216]
−
** [http://www.uniprot.org/uniprot/Q9Z8P1 Q9Z8P1]
+
** [http://www.uniprot.org/uniprot/O29352 O29352]
−
** [http://www.uniprot.org/uniprot/O67041 O67041]
+
** [http://www.uniprot.org/uniprot/O84366 O84366]
−
** [http://www.uniprot.org/uniprot/Q9ZMY1 Q9ZMY1]
+
** [http://www.uniprot.org/uniprot/Q9PPB4 Q9PPB4]
−
** [http://www.uniprot.org/uniprot/Q9PKF6 Q9PKF6]
+
** [http://www.uniprot.org/uniprot/P63945 P63945]
−
** [http://www.uniprot.org/uniprot/P63458 P63458]
+
** [http://www.uniprot.org/uniprot/Q9JUU9 Q9JUU9]
−
** [http://www.uniprot.org/uniprot/O84241 O84241]
+
** [http://www.uniprot.org/uniprot/Q9LZX6 Q9LZX6]
−
** [http://www.uniprot.org/uniprot/Q9WZQ5 Q9WZQ5]
+
** [http://www.uniprot.org/uniprot/Q43038 Q43038]
−
** [http://www.uniprot.org/uniprot/P71019 P71019]
+
** [http://www.uniprot.org/uniprot/P49423 P49423]
−
** [http://www.uniprot.org/uniprot/P07149 P07149]
+
** [http://www.uniprot.org/uniprot/Q55513 Q55513]
−
** [http://www.uniprot.org/uniprot/P73242 P73242]
+
** [http://www.uniprot.org/uniprot/P0A6L2 P0A6L2]
−
** [http://www.uniprot.org/uniprot/Q8RU07 Q8RU07]
+
** [http://www.uniprot.org/uniprot/Q42948 Q42948]
−
** [http://www.uniprot.org/uniprot/Q54205 Q54205]
+
** [http://www.uniprot.org/uniprot/Q42940 Q42940]
−
** [http://www.uniprot.org/uniprot/O54437 O54437]
+
** [http://www.uniprot.org/uniprot/O86841 O86841]
−
** [http://www.uniprot.org/uniprot/Q56692 Q56692]
+
** [http://www.uniprot.org/uniprot/P24847 P24847]
−
** [http://www.uniprot.org/uniprot/O13698 O13698]
+
** [http://www.uniprot.org/uniprot/P24846 P24846]
−
** [http://www.uniprot.org/uniprot/Q9RA34 Q9RA34]
 
−
** [http://www.uniprot.org/uniprot/O69476 O69476]
 
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
 
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=malonyl-coa-acp transacylase|fatty acid synthase}}
+
{{#set: common-name=4-hydroxy-tetrahydrodipicolinate synthase}}
−
{{#set: ec-number=ec-2.3.1.39|ec-2.3.1.86|ec-2.3.1.85}}
+
{{#set: ec-number=ec-4.3.3.7}}
−
{{#set: nb gene associated=15}}
+
{{#set: synonymous=dihydrodipicolinic acid synthase|dihydropicolinate synthetase}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:07, 5 January 2021

Reaction DIHYDRODIPICSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • 4-hydroxy-tetrahydrodipicolinate synthase
  • ec-number:
  • synonymous:
    • dihydrodipicolinic acid synthase
    • dihydropicolinate synthetase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5097, L-lysine biosynthesis VI:
    • 7 reactions found over 7 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I:
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-2941, L-lysine biosynthesis II:
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-2942, L-lysine biosynthesis III:
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=PROSTAGLANDIN-E2-9-REDUCTASE-RXN&oldid=64762"