Difference between revisions of "PROTEIN-ARGININE-DEIMINASE-RXN"

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(Created page with "Category:reaction == Reaction FARNESYLTRANSTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** farnesyltranstransferase ** geranylgeranyl diphosphate syntha...")
(Created page with "Category:reaction == Reaction 3.1.2.21-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.1.2.21 ec-3.1.2.21] == Reaction formula == * 1 [...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction FARNESYLTRANSTRANSFERASE-RXN ==
+
== Reaction 3.1.2.21-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** farnesyltranstransferase
 
−
** geranylgeranyl diphosphate synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.29 ec-2.5.1.29]
+
** [http://enzyme.expasy.org/EC/3.1.2.21 ec-3.1.2.21]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[DODECANOATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ11408]]
−
* Gene: [[SJ13532]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10781]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17982]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20033]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02885]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10346]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7492]], paspaline biosynthesis:
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY-6659]], fusicoccin A biosynthesis:
+
* [[PWY-5994]], palmitate biosynthesis (animals and fungi, cytoplasm):
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY-7517]], brassicicene C biosynthesis:
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6691]], plaunotol biosynthesis:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7721]], methyl phomopsenoate biosynthesis:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7736]], stellatic acid biosynthesis:
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5120]], geranylgeranyl diphosphate biosynthesis:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7720]], ophiobolin F biosynthesis:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17654 17654]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30120 30120]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04014 R04014]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P39464 P39464]
 
−
** [http://www.uniprot.org/uniprot/P24322 P24322]
 
−
** [http://www.uniprot.org/uniprot/P80042 P80042]
 
−
** [http://www.uniprot.org/uniprot/Q12051 Q12051]
 
−
** [http://www.uniprot.org/uniprot/P95999 P95999]
 
−
** [http://www.uniprot.org/uniprot/P48368 P48368]
 
−
** [http://www.uniprot.org/uniprot/P93227 P93227]
 
−
** [http://www.uniprot.org/uniprot/P93228 P93228]
 
−
** [http://www.uniprot.org/uniprot/Q42698 Q42698]
 
−
** [http://www.uniprot.org/uniprot/Q43133 Q43133]
 
−
** [http://www.uniprot.org/uniprot/Q42866 Q42866]
 
−
** [http://www.uniprot.org/uniprot/P54976 P54976]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=farnesyltranstransferase|geranylgeranyl diphosphate synthase}}
+
{{#set: ec-number=ec-3.1.2.21}}
−
{{#set: ec-number=ec-2.5.1.29}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb pathway associated=8}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:15, 14 January 2021

Reaction 3.1.2.21-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5971, palmitate biosynthesis II (bacteria and plant cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis (animals and fungi, cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links





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