Difference between revisions of "PROTEIN-TYROSINE-PHOSPHATASE-RXN"

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(Created page with "Category:reaction == Reaction LUMAZINESYN-RXN == * direction: ** left-to-right * common-name: ** 6,7-dimethyl-8-ribityllumazine synthase * ec-number: ** [http://enzyme.exp...")
(Created page with "Category:reaction == Reaction FESO3OXI-RXN == * direction: ** reversible == Reaction formula == * 2 FE+3[c] '''+''' 1 SO3[c] '''+''' 1 WATER[c] '''<=>''' 2 F...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction LUMAZINESYN-RXN ==
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== Reaction FESO3OXI-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
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** reversible
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* common-name:
 
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** 6,7-dimethyl-8-ribityllumazine synthase
 
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.5.1.78 ec-2.5.1.78]
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''=>''' 1 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[WATER]][c]
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* 2 [[FE+3]][c] '''+''' 1 [[SO3]][c] '''+''' 1 [[WATER]][c] '''<=>''' 2 [[FE+2]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SULFATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[SJ04442]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-6167]], flavin biosynthesis II (archaea):
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* [[FESULFOX-PWY]], sulfur oxidation II (Fe+3-dependent):
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** '''5''' reactions found over '''10''' reactions in the full pathway
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6168]], flavin biosynthesis III (fungi):
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* METANETX-RXN : MNXR115877
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** [http://www.genome.jp/dbget-bin/www_bget?R04457 R04457]
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{{#set: direction=reversible}}
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* RHEA:
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{{#set: nb gene associated=0}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26152 26152]
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{{#set: nb pathway associated=1}}
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{{#set: direction=left-to-right}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: common-name=6,7-dimethyl-8-ribityllumazine synthase}}
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{{#set: reconstruction tool=meneco}}
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{{#set: ec-number=ec-2.5.1.78}}
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{{#set: reconstruction comment=added for gapfilling}}
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{{#set: nb gene associated=1}}
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{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
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{{#set: nb pathway associated=3}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 08:40, 15 March 2021

Reaction FESO3OXI-RXN

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • FESULFOX-PWY, sulfur oxidation II (Fe+3-dependent):
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR115877




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