Difference between revisions of "PRPP"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYLCOASYN-RXN ACYLCOASYN-RXN] == * direction: ** left-to-right * common-name: ** 2,3,4-saturated f...")
(Created page with "Category:metabolite == Metabolite PRPP == * common-name: ** 5-phospho-α-d-ribose 1-diphosphate * smiles: ** c(op(=o)([o-])[o-])c1(oc(op([o-])(=o)op([o-])(=o)[o-])c(o...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYLCOASYN-RXN ACYLCOASYN-RXN] ==
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== Metabolite PRPP ==
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** 2,3,4-saturated fatty acyl-coa synthetase
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** 5-phospho-α-d-ribose 1-diphosphate
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** fatty acyl-coa synthetase
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* smiles:
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** long-chain fatty acid-coa ligase
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** c(op(=o)([o-])[o-])c1(oc(op([o-])(=o)op([o-])(=o)[o-])c(o)c(o)1)
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* ec-number:
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* inchi-key:
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** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
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** pqgcedqwhsbajp-txicztdvsa-i
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* synonymous:
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* molecular-weight:
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** acyl-activating enzyme
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** 385.031
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** fatty acid thiokinase (long-chain)
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== Reaction(s) known to consume the compound ==
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== Reaction formula ==
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* [[ADENPRIBOSYLTRAN-RXN]]
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* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD66-39]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
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* [[ADPART]]
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== Gene(s) associated with this reaction  ==
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* [[APPRT]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[ATPPHOSPHORIBOSYLTRANS-RXN]]
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* Gene: [[SJ05591]]
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* [[GUANPRIBOSYLTRAN-RXN]]
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** Category: [[annotation]]
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* [[HPRT]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[HYPOXANPRIBOSYLTRAN-RXN]]
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* Gene: [[SJ03650]]
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* [[NICOTINATEPRIBOSYLTRANS-RXN]]
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** Category: [[annotation]]
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* [[OROPRIBTRANS-RXN]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[ORPRT]]
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** Category: [[orthology]]
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* [[PRPPAMIDOTRANS-RXN]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[PRPPSYN-RXN]]
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* Gene: [[SJ08692]]
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* [[PRTRANS-RXN]]
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** Category: [[annotation]]
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* [[QUINOPRIBOTRANS-RXN]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RPDPK]]
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* Gene: [[SJ08690]]
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* [[RXN-14270]]
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** Category: [[annotation]]
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* [[URACIL-PRIBOSYLTRANS-RXN]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[XPPRT]]
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* Gene: [[SJ13972]]
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== Reaction(s) known to produce the compound ==
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** Category: [[annotation]]
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* [[APPRT]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[ATPPHOSPHORIBOSYLTRANS-RXN]]
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** Category: [[orthology]]
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* [[GUANPRIBOSYLTRAN-RXN]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[HPRT]]
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* Gene: [[SJ08691]]
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* [[OROPRIBTRANS-RXN]]
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** Category: [[annotation]]
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* [[ORPRT]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[PRPPAMIDOTRANS-RXN]]
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** Category: [[orthology]]
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* [[PRPPSYN-RXN]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[PRTRANS-RXN]]
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</div>
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* [[R5PDP]]
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== Pathway(s)  ==
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* [[RPDPK]]
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* [[PWY-7288]], fatty acid &beta;-oxidation (peroxisome, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7288 PWY-7288]
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* [[XPPRT]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reaction(s) of unknown directionality ==
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* [[PWY66-391]], fatty acid &beta;-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
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{{#set: common-name=5-phospho-&alpha;-d-ribose 1-diphosphate}}
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** '''6''' reactions found over '''7''' reactions in the full pathway
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{{#set: inchi-key=inchikey=pqgcedqwhsbajp-txicztdvsa-i}}
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* [[FAO-PWY]], fatty acid &beta;-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
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{{#set: molecular-weight=385.031}}
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-5136]], fatty acid &beta;-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P18163 P18163]
 
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** [http://www.uniprot.org/uniprot/P39518 P39518]
 
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** [http://www.uniprot.org/uniprot/O51162 O51162]
 
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** [http://www.uniprot.org/uniprot/P39002 P39002]
 
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** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
 
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** [http://www.uniprot.org/uniprot/Q10776 Q10776]
 
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** [http://www.uniprot.org/uniprot/O83181 O83181]
 
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** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
 
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** [http://www.uniprot.org/uniprot/P94547 P94547]
 
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** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
 
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** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
 
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** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
 
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** [http://www.uniprot.org/uniprot/P44446 P44446]
 
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** [http://www.uniprot.org/uniprot/O30039 O30039]
 
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** [http://www.uniprot.org/uniprot/O51539 O51539]
 
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** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
 
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** [http://www.uniprot.org/uniprot/P33121 P33121]
 
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** [http://www.uniprot.org/uniprot/P33124 P33124]
 
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** [http://www.uniprot.org/uniprot/P30624 P30624]
 
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** [http://www.uniprot.org/uniprot/Q02602 Q02602]
 
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** [http://www.uniprot.org/uniprot/P69451 P69451]
 
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** [http://www.uniprot.org/uniprot/P69452 P69452]
 
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** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
 
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** [http://www.uniprot.org/uniprot/P47912 P47912]
 
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** [http://www.uniprot.org/uniprot/P73004 P73004]
 
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** [http://www.uniprot.org/uniprot/O81614 O81614]
 
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** [http://www.uniprot.org/uniprot/O15840 O15840]
 
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** [http://www.uniprot.org/uniprot/Q96537 Q96537]
 
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** [http://www.uniprot.org/uniprot/Q96538 Q96538]
 
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** [http://www.uniprot.org/uniprot/Q96338 Q96338]
 
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** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
 
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** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
 
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** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
 
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** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
 
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** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
 
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** [http://www.uniprot.org/uniprot/O60135 O60135]
 
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</div>
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=fatty acyl-coa synthetase|2,3,4-saturated fatty acyl-coa synthetase|long-chain fatty acid-coa ligase}}
 
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{{#set: ec-number=ec-6.2.1.3}}
 
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{{#set: synonymous=fatty acid thiokinase (long-chain)|acyl-activating enzyme}}
 
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{{#set: nb gene associated=6}}
 
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{{#set: nb pathway associated=4}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Latest revision as of 11:15, 18 March 2021

Metabolite PRPP

  • common-name:
    • 5-phospho-α-d-ribose 1-diphosphate
  • smiles:
    • c(op(=o)([o-])[o-])c1(oc(op([o-])(=o)op([o-])(=o)[o-])c(o)c(o)1)
  • inchi-key:
    • pqgcedqwhsbajp-txicztdvsa-i
  • molecular-weight:
    • 385.031

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=PRPP&oldid=138534"