Difference between revisions of "PRPP"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ16897 == * transcription-direction: ** negative * right-end-position: ** 67856 * left-end-position: ** 57781 * centisome-position: ** 20.95861...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYLCOASYN-RXN ACYLCOASYN-RXN] == * direction: ** left-to-right * common-name: ** 2,3,4-saturated f...")
Line 1: Line 1:
−
[[Category:gene]]
+
[[Category:reaction]]
−
== Gene SJ16897 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYLCOASYN-RXN ACYLCOASYN-RXN] ==
−
* transcription-direction:
+
* direction:
−
** negative
+
** left-to-right
−
* right-end-position:
+
* common-name:
−
** 67856
+
** 2,3,4-saturated fatty acyl-coa synthetase
−
* left-end-position:
+
** fatty acyl-coa synthetase
−
** 57781
+
** long-chain fatty acid-coa ligase
−
* centisome-position:
+
* ec-number:
−
** 20.95861   
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
−
== Organism(s) associated with this gene  ==
+
* synonymous:
−
* [[S.japonica_carotenoid_curated]]
+
** acyl-activating enzyme
−
== Reaction(s) associated ==
+
** fatty acid thiokinase (long-chain)
−
* [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
+
== Reaction formula ==
 +
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD66-39]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
 +
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ05591]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
== Pathway(s) associated ==
+
* Gene: [[SJ03650]]
−
* [[PWY-7511]]
+
** Category: [[annotation]]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
{{#set: transcription-direction=negative}}
+
** Category: [[orthology]]
−
{{#set: right-end-position=67856}}
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
{{#set: left-end-position=57781}}
+
* Gene: [[SJ08692]]
−
{{#set: centisome-position=20.95861    }}
+
** Category: [[annotation]]
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
{{#set: nb reaction associated=1}}
+
* Gene: [[SJ08690]]
−
{{#set: nb pathway associated=1}}
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13972]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08691]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 +
== Pathway(s) ==
 +
* [[PWY-7288]], fatty acid &beta;-oxidation (peroxisome, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7288 PWY-7288]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY66-391]], fatty acid &beta;-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[FAO-PWY]], fatty acid &beta;-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5136]], fatty acid &beta;-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P18163 P18163]
 +
** [http://www.uniprot.org/uniprot/P39518 P39518]
 +
** [http://www.uniprot.org/uniprot/O51162 O51162]
 +
** [http://www.uniprot.org/uniprot/P39002 P39002]
 +
** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
 +
** [http://www.uniprot.org/uniprot/Q10776 Q10776]
 +
** [http://www.uniprot.org/uniprot/O83181 O83181]
 +
** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
 +
** [http://www.uniprot.org/uniprot/P94547 P94547]
 +
** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
 +
** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
 +
** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
 +
** [http://www.uniprot.org/uniprot/P44446 P44446]
 +
** [http://www.uniprot.org/uniprot/O30039 O30039]
 +
** [http://www.uniprot.org/uniprot/O51539 O51539]
 +
** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
 +
** [http://www.uniprot.org/uniprot/P33121 P33121]
 +
** [http://www.uniprot.org/uniprot/P33124 P33124]
 +
** [http://www.uniprot.org/uniprot/P30624 P30624]
 +
** [http://www.uniprot.org/uniprot/Q02602 Q02602]
 +
** [http://www.uniprot.org/uniprot/P69451 P69451]
 +
** [http://www.uniprot.org/uniprot/P69452 P69452]
 +
** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
 +
** [http://www.uniprot.org/uniprot/P47912 P47912]
 +
** [http://www.uniprot.org/uniprot/P73004 P73004]
 +
** [http://www.uniprot.org/uniprot/O81614 O81614]
 +
** [http://www.uniprot.org/uniprot/O15840 O15840]
 +
** [http://www.uniprot.org/uniprot/Q96537 Q96537]
 +
** [http://www.uniprot.org/uniprot/Q96538 Q96538]
 +
** [http://www.uniprot.org/uniprot/Q96338 Q96338]
 +
** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
 +
** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
 +
** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
 +
** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
 +
** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
 +
** [http://www.uniprot.org/uniprot/O60135 O60135]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=fatty acyl-coa synthetase|2,3,4-saturated fatty acyl-coa synthetase|long-chain fatty acid-coa ligase}}
 +
{{#set: ec-number=ec-6.2.1.3}}
 +
{{#set: synonymous=fatty acid thiokinase (long-chain)|acyl-activating enzyme}}
 +
{{#set: nb gene associated=6}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:28, 27 August 2019

Reaction ACYLCOASYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • 2,3,4-saturated fatty acyl-coa synthetase
    • fatty acyl-coa synthetase
    • long-chain fatty acid-coa ligase
  • ec-number:
  • synonymous:
    • acyl-activating enzyme
    • fatty acid thiokinase (long-chain)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7288, fatty acid β-oxidation (peroxisome, yeast): PWY-7288
    • 4 reactions found over 5 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (peroxisome): PWY66-391
    • 6 reactions found over 7 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I: FAO-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-5136, fatty acid β-oxidation II (peroxisome): PWY-5136
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=PRPP&oldid=34358"